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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32285 and RR42_RS32290 are separated by 241 nucleotides
RR42_RS32290 and RR42_RS32295 are separated by 48 nucleotides
RR42_RS32295 and RR42_RS32300 are separated by 930 nucleotides
RR42_RS32300 and RR42_RS32305 are separated by 153 nucleotides
RR42_RS32285: RR42_RS32285 - LysR family transcriptional regulator, at 2,631,681 to 2,632,574
_RS32285
RR42_RS32290: RR42_RS32290 - hypothetical protein, at 2,632,816 to 2,633,292
_RS32290
RR42_RS32295: RR42_RS32295 - chemotaxis protein, at 2,633,341 to 2,634,897
_RS32295
RR42_RS32300: RR42_RS32300 - nickel transporter, at 2,635,828 to 2,636,886
_RS32300
RR42_RS32305: RR42_RS32305 - hypothetical protein, at 2,637,040 to 2,637,963
_RS32305
Group
Condition
RR42
_RS32285
RR42
_RS32290
RR42
_RS32295
RR42
_RS32300
RR42
_RS32305
lb
LB
-1.0
+0.0
-0.1
-1.0
+0.2
nitrogen source
casaminos (N)
-0.5
-0.3
-0.3
-0.6
-0.3
nitrogen source
Glucuronamide (N)
-0.2
-0.0
-0.3
-0.9
+0.1
temperature
R2A 23C
+0.1
-0.3
-0.2
-0.5
-0.2
nitrogen source
L-Serine (N)
-0.5
-0.0
-0.2
-0.4
-0.0
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.3
-0.3
-0.1
+0.1
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.6
-0.1
+0.1
-0.1
nitrogen source
L-Glutamine (N)
-0.4
-0.4
-0.2
+0.0
+0.1
stress
R2A with nitrate 200 mM
+0.2
-0.4
-0.3
-0.1
-0.1
carbon source
L-Glutamine (C)
+0.3
-0.6
-0.3
-0.1
-0.1
carbon source
butyrate (C)
-0.2
-0.4
+0.0
+0.2
-0.3
carbon source
Protocatechuic Acid (C)
-0.5
-0.4
-0.2
+0.5
-0.1
carbon source
adipate (C)
-0.4
-0.0
-0.2
+0.4
-0.3
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.3
-0.3
+0.0
-0.2
carbon source
L-Threonine (C)
-0.3
+0.0
+0.1
-0.5
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
+0.3
-0.1
+0.3
-0.1
carbon source
Disodium Glutarate (C)
+0.1
-0.1
-0.1
+0.4
-0.4
carbon source
L-Histidine (C)
-0.1
+0.0
-0.2
+0.5
-0.3
nitrogen source
L-Lysine (N)
+0.6
-0.2
-0.1
-0.1
-0.1
carbon source
adipate (C)
-0.2
+0.2
-0.3
+0.4
-0.1
carbon source
a-Ketoglutaric (C)
+0.3
-0.2
-0.1
+0.3
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
+0.2
-0.1
-0.5
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
-0.6
+0.1
+0.3
+0.1
nitrogen source
nitrite (N)
+0.1
+0.5
+0.0
-0.5
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.3
+0.0
-0.3
-0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.3
-0.4
+0.3
+0.4
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.3
+0.1
-0.3
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-0.5
+0.2
-0.0
+0.4
carbon source
L-Phenylalanine (C)
+0.5
-0.1
+0.0
+0.4
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
-0.0
+0.2
+0.2
+0.4
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