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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32215 and RR42_RS32220 are separated by 71 nucleotides
RR42_RS32220 and RR42_RS32225 are separated by 23 nucleotides
RR42_RS32225 and RR42_RS32230 are separated by 158 nucleotides
RR42_RS32230 and RR42_RS32235 are separated by 33 nucleotides
RR42_RS32215: RR42_RS32215 - aminomethyltransferase, at 2,614,125 to 2,615,000
_RS32215
RR42_RS32220: RR42_RS32220 - glycosyl transferase family 2, at 2,615,072 to 2,616,211
_RS32220
RR42_RS32225: RR42_RS32225 - NAD-dependent dehydratase, at 2,616,235 to 2,617,236
_RS32225
RR42_RS32230: RR42_RS32230 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 2,617,395 to 2,618,396
_RS32230
RR42_RS32235: RR42_RS32235 - hopanoid biosynthesis associated radical SAM protein HpnH, at 2,618,430 to 2,619,596
_RS32235
Group
Condition
RR42
_RS32215
RR42
_RS32220
RR42
_RS32225
RR42
_RS32230
RR42
_RS32235
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.5
-1.9
-1.4
-3.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
-0.2
-1.5
-1.0
-2.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.4
-0.9
-0.6
-3.2
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.7
-0.7
-0.9
-2.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.0
-1.2
-0.5
-2.4
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.4
-0.5
-0.9
-1.9
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
+0.1
-0.6
-0.6
-2.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.0
-1.0
-0.3
-1.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
-0.6
-0.7
-0.7
-1.2
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.2
-0.7
-0.3
-1.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
+0.0
-0.5
-0.2
-1.6
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.1
-0.2
-0.2
-1.7
stress
R2A with Bacitracin 0.5 mg/ml
+0.2
-0.2
-0.5
-0.6
-1.2
nitrogen source
Glycine (N)
-0.0
-0.2
-0.4
-0.3
-1.3
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.1
-0.1
-0.2
-1.5
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
-0.3
-0.3
-0.2
-1.0
stress
R2A with nitrate 200 mM
-0.2
+0.1
-0.2
-0.4
-1.1
stress
R2A with Zinc 0.1 mM
-0.1
-0.0
-0.5
-0.0
-0.9
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
-0.2
-0.5
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.1
-0.2
-0.4
-0.8
carbon source
D-Gluconic Acid (C)
-0.0
+0.0
+0.1
-0.4
-1.4
carbon source
Heptanoic (C)
+0.1
-0.5
-0.4
-0.2
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.7
+0.2
+0.0
-0.6
carbon source
Trisodium citrate (C)
+0.0
+0.2
-0.1
-0.2
-1.1
nitrogen source
L-Tryptophan (N)
-0.3
+0.2
+0.1
-0.2
-0.9
nitrogen source
L-Valine (N)
-0.1
+0.2
+0.3
-0.2
-0.7
carbon source
adipate (C)
+0.2
-0.5
-0.1
-0.5
+0.9
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
-0.4
+0.3
-0.3
+0.7
lb
LB
+0.0
-0.6
+0.5
-0.2
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.2
+0.4
+0.4
+0.6
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