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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32095 and RR42_RS32100 are separated by 36 nucleotides
RR42_RS32100 and RR42_RS32105 are separated by 1412 nucleotides
RR42_RS32105 and RR42_RS32110 are separated by 399 nucleotides
RR42_RS32110 and RR42_RS32115 are separated by 100 nucleotides
RR42_RS32095: RR42_RS32095 - hypothetical protein, at 2,584,259 to 2,584,831
_RS32095
RR42_RS32100: RR42_RS32100 - hypothetical protein, at 2,584,868 to 2,585,740
_RS32100
RR42_RS32105: RR42_RS32105 - hypothetical protein, at 2,587,153 to 2,587,671
_RS32105
RR42_RS32110: RR42_RS32110 - peptide ABC transporter permease, at 2,588,071 to 2,589,822
_RS32110
RR42_RS32115: RR42_RS32115 - curli production assembly protein CsgG, at 2,589,923 to 2,590,603
_RS32115
Group
Condition
RR42
_RS32095
RR42
_RS32100
RR42
_RS32105
RR42
_RS32110
RR42
_RS32115
carbon source
Disodium Glutarate (C)
-0.4
-0.3
-0.5
+0.0
+0.0
nitrogen source
L-Isoleucine (N)
-0.1
-0.2
-0.3
-0.5
+0.1
carbon source
Azelaic (C)
-0.3
-0.2
-0.5
+0.3
-0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.1
-0.1
-0.5
+0.2
carbon source
Heptanoic (C)
-0.2
-0.7
-0.1
+0.3
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
+0.1
-0.3
-0.1
+0.1
stress
R2A with A22 0.01 mg/ml
-0.3
-0.1
-0.5
+0.1
+0.1
carbon source
pyruvate (C)
-0.2
+0.0
+0.2
-0.7
+0.1
stress
R2A with nitrate 200 mM
-0.2
+0.1
-0.2
-0.5
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.3
+0.2
-0.5
+0.0
carbon source
D-Lactate (C)
-0.4
-0.1
-0.1
+0.4
+0.1
carbon source
Valeric (C)
-0.1
+0.1
+0.4
-0.4
-0.2
stress
R2A with nitrate 200 mM
+0.2
-0.1
+0.4
-0.2
-0.3
nitrogen source
L-Lysine (N)
+0.4
-0.1
-0.5
+0.2
+0.0
carbon source
L-Asparagine (C)
+0.2
-0.3
-0.2
+0.5
-0.0
carbon source
Ethanol (C)
+0.3
-0.5
+0.2
+0.3
-0.2
carbon source
L-Alanine (C)
+0.1
-0.4
+0.5
+0.1
-0.1
carbon source
Suberic (C)
+0.0
+0.0
-0.5
+0.6
+0.1
carbon source
Heptanoic (C)
+0.0
-0.3
-0.2
+0.6
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.4
+0.1
-0.5
+0.2
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.3
+0.2
+0.0
-0.5
+0.3
carbon source
L-Tryptophan (C)
+0.3
-0.2
+0.2
+0.3
-0.1
r2a
R2A
+0.5
+0.2
+0.1
-0.4
+0.1
carbon source
Suberic (C)
-0.1
-0.2
+0.4
+0.5
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
+0.1
+0.4
-0.5
+0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.4
-0.2
+0.6
-0.0
carbon source
D-Gluconic Acid (C)
+0.2
-0.3
+0.3
+0.4
-0.0
carbon source
L-Leucine (C)
+0.2
-0.2
+0.4
+0.4
-0.1
nitrogen source
L-Serine (N)
+0.4
-0.2
+0.3
+0.3
-0.1
nitrogen source
L-Valine (N)
+0.2
-0.2
+0.4
+0.5
+0.1
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