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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32080 and RR42_RS32085 overlap by 4 nucleotides
RR42_RS32085 and RR42_RS32090 are separated by 2 nucleotides
RR42_RS32090 and RR42_RS32095 are separated by 1356 nucleotides
RR42_RS32095 and RR42_RS32100 are separated by 36 nucleotides
RR42_RS32080: RR42_RS32080 - filamentous hemagglutinin adhesin, at 2,574,397 to 2,582,430
_RS32080
RR42_RS32085: RR42_RS32085 - hypothetical protein, at 2,582,427 to 2,582,681
_RS32085
RR42_RS32090: RR42_RS32090 - hypothetical protein, at 2,582,684 to 2,582,902
_RS32090
RR42_RS32095: RR42_RS32095 - hypothetical protein, at 2,584,259 to 2,584,831
_RS32095
RR42_RS32100: RR42_RS32100 - hypothetical protein, at 2,584,868 to 2,585,740
_RS32100
Group
Condition
RR42
_RS32080
RR42
_RS32085
RR42
_RS32090
RR42
_RS32095
RR42
_RS32100
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
-2.0
-0.2
-0.0
-0.4
lb
LB
-0.1
-0.4
-1.6
-0.0
-0.0
stress
R2A with Chlorite 4 mM
-0.0
-1.9
+0.0
+0.0
+0.1
carbon source
L-Tryptophan (C)
-0.0
-1.8
-0.1
+0.3
-0.2
carbon source
L-Leucine (C)
+0.0
-0.7
-1.1
+0.2
-0.2
carbon source
L-Glutamine (C)
+0.1
-1.4
-0.1
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-1.4
-0.2
-0.3
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-1.5
-0.1
-0.2
+0.1
r2a
R2A
+0.1
-1.4
-0.4
+0.2
-0.2
stress
R2A with Chloride 300 mM
+0.1
-1.6
+0.1
+0.0
-0.0
stress
R2A with Chlorite 4 mM
+0.2
-1.0
-0.3
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-1.6
+0.6
+0.1
-0.1
nitrogen source
L-Glutamine (N)
-0.1
-2.0
+1.2
+0.2
-0.2
r2a
R2A
-0.1
-1.0
-0.2
+0.5
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.0
-0.8
+0.8
+0.1
-0.3
carbon source
propionate (C)
-0.0
-0.9
+0.6
+0.1
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.8
-0.9
+0.1
-0.0
carbon source
Heptanoic (C)
-0.0
+1.0
+0.5
-0.2
-0.7
carbon source
D,L-Lactate (C)
-0.1
+1.1
-0.2
+0.1
-0.2
carbon source
L-Glutamine (C)
-0.0
+0.5
+0.6
+0.3
-0.4
carbon source
adipate (C)
+0.0
+1.2
+0.7
+0.0
-0.7
nitrogen source
Glucuronamide (N)
-0.0
+0.7
+0.8
-0.1
-0.2
carbon source
Azelaic (C)
+0.1
+0.3
+0.9
+0.2
-0.2
carbon source
Hexanoic (C)
+0.0
+1.5
-0.4
+0.2
+0.1
carbon source
Pimelic (C)
+0.0
+1.4
+0.4
+0.1
-0.2
carbon source
Octanoic (C)
-0.0
+1.6
+0.3
-0.2
-0.1
carbon source
succinate (C)
-0.0
+1.3
+0.4
-0.0
+0.0
carbon source
Protocatechuic Acid (C)
-0.0
+0.7
+0.5
+0.3
+0.2
carbon source
Suberic (C)
-0.0
+1.4
+0.4
+0.0
+0.0
carbon source
D-Lactate (C)
-0.1
+1.3
+0.5
+0.3
-0.0
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