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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32050 and RR42_RS32055 are separated by 128 nucleotides
RR42_RS32055 and RR42_RS32060 are separated by 137 nucleotides
RR42_RS32060 and RR42_RS32065 are separated by 3 nucleotides
RR42_RS32065 and RR42_RS32070 are separated by 95 nucleotides
RR42_RS32050: RR42_RS32050 - AraC family transcriptional regulator, at 2,567,432 to 2,568,625
_RS32050
RR42_RS32055: RR42_RS32055 - 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2)
(from data)
, at 2,568,754 to 2,570,079
_RS32055
RR42_RS32060: RR42_RS32060 - protocatechuate 3,4-dioxygenase, at 2,570,217 to 2,570,795
_RS32060
RR42_RS32065: RR42_RS32065 - protocatechuate 3,4-dioxygenase, beta subunit (EC 1.13.11.3)
(from data)
, at 2,570,799 to 2,571,524
_RS32065
RR42_RS32070: RR42_RS32070 - LysR family transcriptional regulator, at 2,571,620 to 2,572,570
_RS32070
Group
Condition
RR42
_RS32050
RR42
_RS32055
RR42
_RS32060
RR42
_RS32065
RR42
_RS32070
carbon source
4-Hydroxybenzoic Acid (C)
-4.1
-5.4
-4.3
-4.7
-4.3
carbon source
4-Hydroxybenzoic Acid (C)
-3.8
-2.8
-4.8
-3.9
-4.6
carbon source
Protocatechuic Acid (C)
-3.2
-2.4
-4.6
-4.2
+0.8
carbon source
Protocatechuic Acid (C)
-1.8
-1.6
-3.8
-4.2
+0.0
carbon source
propionate (C)
-1.1
-0.7
-0.3
-0.1
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-1.0
-0.1
-0.2
-0.6
carbon source
adipate (C)
-0.5
-0.2
-0.4
-0.2
-0.4
carbon source
D,L-Lactate (C)
-0.6
-0.4
+0.1
-0.3
-0.6
carbon source
adipate (C)
+0.5
-0.3
-0.2
-0.4
-1.3
carbon source
Azelaic (C)
-1.0
-0.4
-0.2
-0.1
+0.0
stress
R2A with nitrate 200 mM
-1.0
-0.5
-0.3
+0.2
-0.1
nitrogen source
L-Lysine (N)
-0.9
-0.3
-0.2
+0.0
-0.4
carbon source
succinate (C)
-1.3
+0.0
-0.2
-0.2
+0.0
carbon source
Valeric (C)
-0.5
-0.6
-0.3
-0.2
+0.2
nitrogen source
L-Isoleucine (N)
-0.7
-0.7
-0.1
+0.2
+0.2
nitrogen source
casaminos (N)
+0.6
-1.0
+0.0
+0.2
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.9
-1.2
+0.0
-0.2
-0.1
carbon source
propionate (C)
-0.7
-0.4
-0.1
-0.0
+0.7
nitrogen source
nitrite (N)
+0.8
-0.3
-0.0
+0.3
-1.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.6
+0.4
-0.4
+0.0
+0.4
lb
LB
-0.6
+0.8
-0.4
-0.1
+0.4
carbon source
a-Ketoglutaric (C)
+0.4
-0.7
-0.0
+0.1
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.8
+0.3
-0.2
-0.2
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.6
-0.6
+0.6
-0.1
+0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
+0.2
+0.3
-0.3
+1.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+1.0
+0.5
-0.3
+0.0
-0.0
stress
R2A with Zinc 0.1 mM
+0.7
-0.1
+0.0
-0.4
+0.9
temperature
R2A 37C
+0.3
+0.4
-0.1
-0.2
+0.7
stress
R2A with Lomefloxacin 0.00075 mM
+0.7
+0.5
-0.2
+0.1
+0.6
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
+0.4
+0.6
+0.1
+0.1
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