Fitness for 5 genes in Cupriavidus basilensis FW507-4G11

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500 ntRR42_RS32050 and RR42_RS32055 are separated by 128 nucleotidesRR42_RS32055 and RR42_RS32060 are separated by 137 nucleotidesRR42_RS32060 and RR42_RS32065 are separated by 3 nucleotidesRR42_RS32065 and RR42_RS32070 are separated by 95 nucleotides RR42_RS32050: RR42_RS32050 - AraC family transcriptional regulator, at 2,567,432 to 2,568,625 _RS32050 RR42_RS32055: RR42_RS32055 - 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) (from data), at 2,568,754 to 2,570,079 _RS32055 RR42_RS32060: RR42_RS32060 - protocatechuate 3,4-dioxygenase, at 2,570,217 to 2,570,795 _RS32060 RR42_RS32065: RR42_RS32065 - protocatechuate 3,4-dioxygenase, beta subunit (EC 1.13.11.3) (from data), at 2,570,799 to 2,571,524 _RS32065 RR42_RS32070: RR42_RS32070 - LysR family transcriptional regulator, at 2,571,620 to 2,572,570 _RS32070
Group Condition RR42_RS32050 RR42_RS32055 RR42_RS32060 RR42_RS32065 RR42_RS32070
carbon source 4-Hydroxybenzoic Acid (C) -4.1 -5.4 -4.3 -4.7 -4.3
carbon source 4-Hydroxybenzoic Acid (C) -3.8 -2.8 -4.8 -3.9 -4.6
carbon source Protocatechuic Acid (C) -3.2 -2.4 -4.6 -4.2 +0.8
carbon source Protocatechuic Acid (C) -1.8 -1.6 -3.8 -4.2 +0.0
carbon source propionate (C) -1.1 -0.7 -0.3 -0.1 -0.1
stress R2A with Doxycycline hyclate 0.0001 mg/ml -0.0 -1.0 -0.1 -0.2 -0.6
carbon source adipate (C) -0.5 -0.2 -0.4 -0.2 -0.4
carbon source D,L-Lactate (C) -0.6 -0.4 +0.1 -0.3 -0.6
carbon source adipate (C) +0.5 -0.3 -0.2 -0.4 -1.3
carbon source Azelaic (C) -1.0 -0.4 -0.2 -0.1 +0.0
stress R2A with nitrate 200 mM -1.0 -0.5 -0.3 +0.2 -0.1
nitrogen source L-Lysine (N) -0.9 -0.3 -0.2 +0.0 -0.4
carbon source succinate (C) -1.3 +0.0 -0.2 -0.2 +0.0
carbon source Valeric (C) -0.5 -0.6 -0.3 -0.2 +0.2
nitrogen source L-Isoleucine (N) -0.7 -0.7 -0.1 +0.2 +0.2
nitrogen source casaminos (N) +0.6 -1.0 +0.0 +0.2 -0.6
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL +0.9 -1.2 +0.0 -0.2 -0.1
carbon source propionate (C) -0.7 -0.4 -0.1 -0.0 +0.7
nitrogen source nitrite (N) +0.8 -0.3 -0.0 +0.3 -1.1
stress R2A with Dimethyl Sulfoxide 5 vol% -0.6 +0.4 -0.4 +0.0 +0.4
lb LB -0.6 +0.8 -0.4 -0.1 +0.4
carbon source a-Ketoglutaric (C) +0.4 -0.7 -0.0 +0.1 +0.5
carbon source Carbon source Deoxyribonucleic from herring sperm 10 mg/mL +0.8 +0.3 -0.2 -0.2 -0.5
stress R2A with Cobalt chloride 0.3 mM +0.6 -0.6 +0.6 -0.1 +0.4
stress R2A with Paraquat dichloride 0.064 mg/ml -0.3 +0.2 +0.3 -0.3 +1.1
oxygen_nitrate exometabolites; 10% oxygen; 5 mM nitrate +1.0 +0.5 -0.3 +0.0 -0.0
stress R2A with Zinc 0.1 mM +0.7 -0.1 +0.0 -0.4 +0.9
temperature R2A 37C +0.3 +0.4 -0.1 -0.2 +0.7
stress R2A with Lomefloxacin 0.00075 mM +0.7 +0.5 -0.2 +0.1 +0.6
stress R2A with D-Cycloserine 0.5 mg/ml +0.6 +0.4 +0.6 +0.1 +0.1
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