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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32015 and RR42_RS32020 are separated by 56 nucleotides
RR42_RS32020 and RR42_RS32025 are separated by 335 nucleotides
RR42_RS32025 and RR42_RS32030 are separated by 5 nucleotides
RR42_RS32030 and RR42_RS32035 are separated by 440 nucleotides
RR42_RS32015: RR42_RS32015 - hypothetical protein, at 2,561,113 to 2,561,301
_RS32015
RR42_RS32020: RR42_RS32020 - hypothetical protein, at 2,561,358 to 2,561,966
_RS32020
RR42_RS32025: RR42_RS32025 - glyoxalase, at 2,562,302 to 2,562,661
_RS32025
RR42_RS32030: RR42_RS32030 - LuxR family transcriptional regulator, at 2,562,667 to 2,563,854
_RS32030
RR42_RS32035: RR42_RS32035 - short-chain dehydrogenase, at 2,564,295 to 2,565,104
_RS32035
Group
Condition
RR42
_RS32015
RR42
_RS32020
RR42
_RS32025
RR42
_RS32030
RR42
_RS32035
lb
LB
N.D.
-1.8
N.D.
+0.5
-0.6
carbon source
Protocatechuic Acid (C)
N.D.
+0.5
N.D.
-1.3
-1.0
carbon source
propionate (C)
N.D.
-0.2
N.D.
-0.1
-1.1
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.0
N.D.
-0.2
-1.1
carbon source
D-Lactate (C)
N.D.
-0.3
N.D.
-0.2
-0.7
carbon source
D,L-Lactate (C)
N.D.
+0.2
N.D.
-0.3
-0.9
stress
R2A with D-Cycloserine 0.01 mg/ml
N.D.
+0.2
N.D.
-0.2
-0.9
carbon source
L-Proline (C)
N.D.
-0.7
N.D.
+0.1
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
-0.4
N.D.
+0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.2
N.D.
-0.2
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.0
N.D.
+0.3
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.7
N.D.
+0.3
+0.1
carbon source
Pimelic (C)
N.D.
+0.5
N.D.
-0.3
-0.4
carbon source
Suberic (C)
N.D.
+0.5
N.D.
-0.6
-0.0
carbon source
Azelaic (C)
N.D.
+0.5
N.D.
+0.2
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.2
N.D.
-0.2
+0.8
carbon source
Disodium Glutarate (C)
N.D.
+0.6
N.D.
+0.4
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.5
N.D.
-0.3
+0.5
stress
R2A with copper (II) chloride 0.25 mM
N.D.
-0.2
N.D.
+0.5
+0.5
carbon source
L-Threonine (C)
N.D.
+0.4
N.D.
-0.4
+0.7
carbon source
D-Lactate (C)
N.D.
+0.4
N.D.
-0.3
+0.9
carbon source
L-Lactate (C)
N.D.
+0.4
N.D.
-0.3
+0.9
carbon source
Ethanol (C)
N.D.
+0.4
N.D.
-0.1
+0.9
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
+0.3
N.D.
+0.0
+0.8
stress
R2A with Zinc 0.1 mM
N.D.
+0.6
N.D.
+0.4
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
+0.3
N.D.
-0.3
+1.2
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.7
N.D.
-0.2
+0.8
stress
R2A with nitrate 200 mM
N.D.
+0.2
N.D.
+0.3
+0.8
stress
R2A with A22 0.01 mg/ml
N.D.
+0.4
N.D.
+0.2
+0.9
carbon source
L-Malic (C)
N.D.
+0.7
N.D.
+0.1
+0.9
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