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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32010 and RR42_RS32015 overlap by 16 nucleotides
RR42_RS32015 and RR42_RS32020 are separated by 56 nucleotides
RR42_RS32020 and RR42_RS32025 are separated by 335 nucleotides
RR42_RS32025 and RR42_RS32030 are separated by 5 nucleotides
RR42_RS32010: RR42_RS32010 - 5,10-methylene tetrahydromethanopterin reductase, at 2,559,977 to 2,561,128
_RS32010
RR42_RS32015: RR42_RS32015 - hypothetical protein, at 2,561,113 to 2,561,301
_RS32015
RR42_RS32020: RR42_RS32020 - hypothetical protein, at 2,561,358 to 2,561,966
_RS32020
RR42_RS32025: RR42_RS32025 - glyoxalase, at 2,562,302 to 2,562,661
_RS32025
RR42_RS32030: RR42_RS32030 - LuxR family transcriptional regulator, at 2,562,667 to 2,563,854
_RS32030
Group
Condition
RR42
_RS32010
RR42
_RS32015
RR42
_RS32020
RR42
_RS32025
RR42
_RS32030
lb
LB
-0.2
N.D.
-1.8
N.D.
+0.5
carbon source
Protocatechuic Acid (C)
-0.3
N.D.
+0.5
N.D.
-1.3
carbon source
adipate (C)
-0.1
N.D.
-0.2
N.D.
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
-0.4
N.D.
+0.2
N.D.
-0.4
carbon source
L-Proline (C)
+0.2
N.D.
-0.7
N.D.
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.9
N.D.
+0.3
N.D.
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
N.D.
-0.7
N.D.
+0.3
carbon source
Suberic (C)
-0.2
N.D.
+0.5
N.D.
-0.6
carbon source
L-Leucine (C)
+0.3
N.D.
+0.0
N.D.
-0.6
carbon source
L-Tryptophan (C)
+0.4
N.D.
-0.4
N.D.
-0.2
r2a
R2A
-0.1
N.D.
+0.5
N.D.
-0.3
nitrogen source
L-Glutamine (N)
+0.8
N.D.
-0.0
N.D.
-0.7
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
N.D.
+0.2
N.D.
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
N.D.
-0.5
N.D.
+0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
N.D.
+0.5
N.D.
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
N.D.
-0.2
N.D.
-0.2
carbon source
L-Threonine (C)
+0.2
N.D.
+0.4
N.D.
-0.4
carbon source
Azelaic (C)
+0.3
N.D.
+0.4
N.D.
-0.3
carbon source
L-Lactate (C)
+0.2
N.D.
-0.3
N.D.
+0.4
carbon source
D-Lactate (C)
+0.4
N.D.
+0.4
N.D.
-0.3
nitrogen source
L-Lysine (N)
+0.4
N.D.
-0.3
N.D.
+0.4
carbon source
Pimelic (C)
+0.4
N.D.
+0.5
N.D.
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
N.D.
+0.7
N.D.
-0.2
nitrogen source
L-Tryptophan (N)
+0.4
N.D.
+0.4
N.D.
-0.1
carbon source
Heptanoic (C)
+0.2
N.D.
+0.5
N.D.
+0.2
carbon source
Disodium Glutarate (C)
-0.0
N.D.
+0.6
N.D.
+0.4
stress
R2A with Zinc 0.1 mM
+0.0
N.D.
+0.6
N.D.
+0.4
carbon source
L-Phenylalanine (C)
+0.4
N.D.
+0.3
N.D.
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
N.D.
+0.1
N.D.
+0.8
carbon source
L-Malic (C)
+0.4
N.D.
+0.7
N.D.
+0.1
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