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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31925 and RR42_RS31930 are separated by 54 nucleotides
RR42_RS31930 and RR42_RS31935 are separated by 9 nucleotides
RR42_RS31935 and RR42_RS31940 are separated by 45 nucleotides
RR42_RS31940 and RR42_RS31945 overlap by 4 nucleotides
RR42_RS31925: RR42_RS31925 - acyl-CoA dehydrogenase, at 2,539,681 to 2,540,751
_RS31925
RR42_RS31930: RR42_RS31930 - acyl-CoA dehydrogenase, at 2,540,806 to 2,541,975
_RS31930
RR42_RS31935: RR42_RS31935 - enoyl-CoA hydratase, at 2,541,985 to 2,542,770
_RS31935
RR42_RS31940: RR42_RS31940 - 2-nitropropane dioxygenase, at 2,542,816 to 2,543,925
_RS31940
RR42_RS31945: RR42_RS31945 - enoyl-CoA hydratase, at 2,543,922 to 2,544,812
_RS31945
Group
Condition
RR42
_RS31925
RR42
_RS31930
RR42
_RS31935
RR42
_RS31940
RR42
_RS31945
nitrogen source
L-Glutamine (N)
N.D.
-0.6
-0.9
-0.5
-0.4
nitrogen source
L-Phenylalanine (N)
N.D.
-0.7
-0.7
-0.6
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-0.0
-0.7
-1.6
+0.1
nitrogen source
Glucuronamide (N)
N.D.
-0.4
-0.5
-0.5
-0.7
carbon source
D,L-Lactate (C)
N.D.
-0.1
-0.4
-0.2
-1.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
N.D.
-0.1
-0.4
-0.0
-1.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.4
-0.4
-1.1
+0.1
r2a
R2A
N.D.
-0.7
-0.1
-0.3
-0.6
nitrogen source
L-Serine (N)
N.D.
-0.2
-0.9
-0.4
-0.2
nitrogen source
casaminos (N)
N.D.
-0.5
-0.5
-0.3
-0.3
temperature
R2A 23C
N.D.
-0.2
-0.1
-0.8
-0.4
carbon source
succinate (C)
N.D.
+0.3
-0.3
-0.9
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.5
+0.6
+0.7
-1.8
carbon source
Octanoic (C)
N.D.
+0.1
-0.5
+0.2
-0.8
stress
R2A with nitrate 150 mM
N.D.
-0.4
-0.3
-0.4
+0.5
carbon source
propionate (C)
N.D.
+0.2
-0.7
-0.4
+0.4
carbon source
L-Histidine (C)
N.D.
-0.3
+0.2
+0.3
-0.8
carbon source
adipate (C)
N.D.
-0.0
-0.0
+0.7
-0.9
carbon source
Dodecandioic (C)
N.D.
+0.3
-0.8
-0.1
+0.4
carbon source
Protocatechuic Acid (C)
N.D.
-0.3
-0.3
+0.9
-0.2
carbon source
pyruvate (C)
N.D.
-0.1
+0.4
+0.6
-0.4
carbon source
L-Malic (C)
N.D.
+0.1
+0.3
+0.7
-0.4
stress
R2A with Cobalt chloride 0.5 mM
N.D.
-0.2
+0.7
+0.7
-0.5
carbon source
succinate (C)
N.D.
-0.1
+0.7
+0.7
-0.2
carbon source
propionate (C)
N.D.
-0.1
+0.4
+0.6
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
+0.3
+0.1
+1.1
-0.2
stress
R2A with Chlorite 4 mM
N.D.
+0.1
+0.8
+0.6
-0.1
lb
LB
N.D.
+0.5
+0.3
-0.1
+0.6
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
+0.4
+0.4
+0.4
+0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
-0.3
+0.9
+1.2
+0.1
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