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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31775 and RR42_RS31780 are separated by 347 nucleotides
RR42_RS31780 and RR42_RS31785 are separated by 91 nucleotides
RR42_RS31785 and RR42_RS31790 are separated by 45 nucleotides
RR42_RS31790 and RR42_RS31800 are separated by 1291 nucleotides
RR42_RS31775: RR42_RS31775 - HxlR family transcriptional regulator, at 2,505,062 to 2,505,565
_RS31775
RR42_RS31780: RR42_RS31780 - MFS transporter, at 2,505,913 to 2,507,235
_RS31780
RR42_RS31785: RR42_RS31785 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4)
(from data)
, at 2,507,327 to 2,509,876
_RS31785
RR42_RS31790: RR42_RS31790 - nitrite reductase, at 2,509,922 to 2,510,293
_RS31790
RR42_RS31800: RR42_RS31800 - Nitrate reductase (EC 1.7.99.4)
(from data)
, at 2,511,585 to 2,514,377
_RS31800
Group
Condition
RR42
_RS31775
RR42
_RS31780
RR42
_RS31785
RR42
_RS31790
RR42
_RS31800
nitrogen source
nitrate (N)
+0.3
-2.7
-3.5
-2.3
-3.4
nitrogen source
nitrite (N)
-0.7
-3.6
-3.4
-2.1
+0.1
carbon source
Hexanoic (C)
-2.4
-0.0
-0.1
-0.4
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
-0.2
-0.1
-1.8
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
-0.1
+0.3
-2.2
-0.1
stress
R2A with Chlorite 4 mM
-0.4
-0.1
+0.0
-2.3
+0.2
carbon source
Heptanoic (C)
-2.0
+0.1
-0.1
-0.7
+0.3
nitrogen source
Glucuronamide (N)
-0.8
-0.0
-0.3
-0.8
-0.2
carbon source
Octanoic (C)
-2.4
-0.1
+0.1
+0.3
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.3
-0.0
-1.5
-0.2
carbon source
D-Lactate (C)
-0.3
-0.1
-0.2
-1.2
-0.1
nitrogen source
L-Tryptophan (N)
-0.5
-0.2
-0.3
-0.8
+0.0
nitrogen source
L-Isoleucine (N)
-0.2
-0.4
-0.6
-0.2
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.1
+0.1
-1.3
-0.0
carbon source
Octanoic (C)
-1.8
+0.0
+0.1
+0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.2
+0.1
-1.0
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
+0.1
+0.1
-1.6
+0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.1
+0.2
-0.6
+0.1
carbon source
Heptanoic (C)
-1.5
-0.0
+0.2
+0.3
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.1
+0.1
-1.4
+0.1
carbon source
Valeric (C)
+0.7
+0.1
+0.1
-1.7
-0.0
carbon source
Hexanoic (C)
-1.2
+0.1
+0.1
+0.5
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.4
-0.2
+0.2
+0.9
-0.0
lb
LB
+0.3
-0.8
+0.3
-0.4
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.0
-0.6
-0.2
+0.9
-0.3
nitrogen source
L-Tryptophan (N)
-0.3
-0.1
-0.4
+0.8
-0.1
carbon source
Dodecandioic (C)
-0.7
-0.0
-0.2
+0.9
+0.1
nitrogen source
L-Isoleucine (N)
+0.5
-0.2
-0.4
+0.6
+0.0
stress
R2A with Sisomicin 0.035 mg/ml
+0.4
+0.0
-0.2
+1.4
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.2
+0.3
+1.2
-0.1
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