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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31715 and RR42_RS31720 are separated by 693 nucleotides
RR42_RS31720 and RR42_RS31725 overlap by 4 nucleotides
RR42_RS31725 and RR42_RS31730 are separated by 41 nucleotides
RR42_RS31730 and RR42_RS31735 overlap by 4 nucleotides
RR42_RS31715: RR42_RS31715 - hypothetical protein, at 2,493,418 to 2,493,747
_RS31715
RR42_RS31720: RR42_RS31720 - transcriptional regulator, at 2,494,441 to 2,494,734
_RS31720
RR42_RS31725: RR42_RS31725 - regulator, at 2,494,731 to 2,496,032
_RS31725
RR42_RS31730: RR42_RS31730 - formimidoylglutamase, at 2,496,074 to 2,497,015
_RS31730
RR42_RS31735: RR42_RS31735 - ABC transporter ATP-binding protein, at 2,497,012 to 2,497,773
_RS31735
Group
Condition
RR42
_RS31715
RR42
_RS31720
RR42
_RS31725
RR42
_RS31730
RR42
_RS31735
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
N.D.
-0.2
+0.1
-2.2
carbon source
L-Leucine (C)
-0.2
N.D.
+0.0
-0.2
-0.8
nitrogen source
L-Valine (N)
-0.4
N.D.
-0.1
+0.1
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
N.D.
-0.1
-0.1
-0.8
carbon source
L-Proline (C)
-0.3
N.D.
+0.2
-0.3
-0.4
nitrogen source
L-Leucine (N)
+0.4
N.D.
-0.2
+0.1
-1.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.9
N.D.
+0.1
+0.2
-0.1
nitrogen source
L-Serine (N)
+0.8
N.D.
-0.0
-0.0
-1.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
N.D.
-0.3
+0.2
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
N.D.
+0.4
-0.1
+0.0
nitrogen source
casaminos (N)
+0.4
N.D.
-0.0
-0.1
-0.6
stress
R2A with Cephalothin 0.25 mg/ml
+0.5
N.D.
-0.1
+0.1
-0.7
nitrogen source
Glycine (N)
+0.3
N.D.
+0.1
+0.2
-0.7
carbon source
Protocatechuic Acid (C)
-0.2
N.D.
-0.4
-0.2
+0.7
carbon source
a-Ketoglutaric (C)
-0.5
N.D.
-0.0
-0.0
+0.5
temperature
R2A 23C
-0.4
N.D.
-0.2
+0.1
+0.6
carbon source
L-Alanine (C)
+0.7
N.D.
+0.1
+0.0
-0.6
nitrogen source
Glucuronamide (N)
+0.8
N.D.
+0.0
-0.2
-0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.1
N.D.
-0.3
+0.1
+0.7
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
N.D.
+0.3
+0.3
+0.4
nitrogen source
D-Alanine (N)
+1.0
N.D.
-0.1
+0.1
-0.3
nitrogen source
nitrite (N)
+0.7
N.D.
+0.1
-0.2
+0.2
stress
R2A with Chlorite 4 mM
+0.1
N.D.
-0.1
+0.3
+0.7
stress
R2A with Lomefloxacin 0.001 mM
-0.3
N.D.
+0.1
-0.0
+1.2
lb
LB
+0.6
N.D.
-0.1
-0.1
+0.7
nitrogen source
L-Phenylalanine (N)
+1.1
N.D.
-0.1
-0.1
+0.1
carbon source
adipate (C)
+0.2
N.D.
+0.1
-0.2
+0.9
stress
R2A with Cobalt chloride 0.5 mM
+0.5
N.D.
-0.0
-0.0
+0.7
carbon source
D-Lactate (C)
+0.3
N.D.
-0.0
+0.1
+0.8
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
N.D.
-0.1
-0.1
+0.8
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