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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31595 and RR42_RS31600 are separated by 53 nucleotides
RR42_RS31600 and RR42_RS31605 are separated by 523 nucleotides
RR42_RS31605 and RR42_RS31610 are separated by 207 nucleotides
RR42_RS31610 and RR42_RS31615 are separated by 34 nucleotides
RR42_RS31595: RR42_RS31595 - hypothetical protein, at 2,467,410 to 2,467,958
_RS31595
RR42_RS31600: RR42_RS31600 - hypothetical protein, at 2,468,012 to 2,468,725
_RS31600
RR42_RS31605: RR42_RS31605 - permease, at 2,469,249 to 2,470,667
_RS31605
RR42_RS31610: RR42_RS31610 - cystathionine beta-lyase, at 2,470,875 to 2,472,083
_RS31610
RR42_RS31615: RR42_RS31615 - phosphate ABC transporter ATP-binding protein, at 2,472,118 to 2,472,975
_RS31615
Group
Condition
RR42
_RS31595
RR42
_RS31600
RR42
_RS31605
RR42
_RS31610
RR42
_RS31615
lb
LB
-1.3
-0.3
+0.3
+0.3
-1.2
r2a
R2A
-1.0
-0.6
-0.1
-0.0
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.2
-0.1
-0.2
-1.2
temperature
R2A 37C
-0.5
-0.3
-0.2
-0.2
-0.5
carbon source
Trisodium citrate (C)
-0.5
-0.3
-0.6
-0.2
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.2
-0.3
-0.0
-1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.5
+0.6
-0.1
-1.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.1
-0.5
+0.2
-0.8
carbon source
Protocatechuic Acid (C)
-0.2
-0.4
-0.6
+0.1
+0.1
carbon source
L-Histidine (C)
-0.6
-0.5
+0.2
+0.1
-0.3
stress
R2A with Chlorite 4 mM
-0.8
+0.5
-0.4
+0.0
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.3
-0.3
-0.2
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.4
+0.2
-0.5
+0.0
carbon source
L-Lactate (C)
-0.6
-0.5
+0.2
+0.2
+0.1
carbon source
propionate (C)
-0.4
-0.5
-0.2
+0.1
+0.4
carbon source
Dodecandioic (C)
-0.3
-0.6
-0.1
-0.1
+0.5
carbon source
Ethanol (C)
-0.3
+0.7
-0.2
-0.0
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.6
-0.8
+0.3
+0.2
+0.5
nitrogen source
L-Glutamine (N)
-0.3
+0.5
-0.7
+0.0
+0.0
nitrogen source
casaminos (N)
-0.2
-0.5
-0.3
-0.1
+0.6
carbon source
adipate (C)
+0.1
-1.0
-0.2
+0.2
+0.5
carbon source
Suberic (C)
+0.4
-0.6
-0.3
+0.2
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.7
-0.2
-0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
+0.2
-0.2
+0.1
+0.4
carbon source
a-Ketoglutaric (C)
-0.2
+0.8
-0.1
-0.1
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.7
+0.2
-0.0
-0.7
stress
R2A with Lomefloxacin 0.001 mM
+0.0
-0.7
-0.0
+0.1
+1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+1.0
+0.2
+0.2
-0.5
stress
R2A with Zinc 0.1 mM
-0.3
+0.7
+0.0
-0.3
+0.4
carbon source
adipate (C)
+0.3
-0.1
-0.3
-0.3
+1.0
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