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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31570 and RR42_RS31575 are separated by 151 nucleotides
RR42_RS31575 and RR42_RS31580 are separated by 73 nucleotides
RR42_RS31580 and RR42_RS31585 are separated by 120 nucleotides
RR42_RS31585 and RR42_RS31590 are separated by 62 nucleotides
RR42_RS31570: RR42_RS31570 - Asp/Glu/hydantoin racemase, at 2,462,201 to 2,462,821
_RS31570
RR42_RS31575: RR42_RS31575 - GntR family transcriptional regulator, at 2,462,973 to 2,463,656
_RS31575
RR42_RS31580: RR42_RS31580 - 3-hydroxybutyryl-CoA dehydratase, at 2,463,730 to 2,464,494
_RS31580
RR42_RS31585: RR42_RS31585 - ABC transporter substrate-binding protein, at 2,464,615 to 2,465,568
_RS31585
RR42_RS31590: RR42_RS31590 - carnitine dehydratase, at 2,465,631 to 2,466,806
_RS31590
Group
Condition
RR42
_RS31570
RR42
_RS31575
RR42
_RS31580
RR42
_RS31585
RR42
_RS31590
carbon source
Protocatechuic Acid (C)
-0.2
-1.5
+0.1
-0.2
-0.3
carbon source
L-Alanine (C)
+0.3
-1.3
-0.1
-0.1
-0.7
nitrogen source
Glucuronamide (N)
-0.1
-1.4
+0.0
-0.2
+0.1
carbon source
adipate (C)
-0.2
-1.2
+0.0
+0.0
-0.2
carbon source
Pimelic (C)
+0.2
-1.1
-0.2
-0.0
-0.3
stress
R2A with Zinc 0.1 mM
-0.1
-0.9
-0.7
+0.1
+0.3
carbon source
L-Leucine (C)
+0.1
-0.6
-0.1
+0.1
-0.7
nitrogen source
D-Alanine (N)
-0.0
-0.8
+0.1
-0.1
-0.4
carbon source
Protocatechuic Acid (C)
-0.2
-1.2
+0.0
+0.2
-0.0
lb
LB
+0.2
-1.3
+0.2
+0.3
-0.6
carbon source
Pimelic (C)
-0.2
-0.9
-0.3
+0.0
+0.2
nitrogen source
L-Leucine (N)
+0.1
-0.8
+0.2
-0.0
-0.5
carbon source
L-Glutamine (C)
-0.0
-1.0
+0.3
-0.0
-0.2
carbon source
Ethanol (C)
+0.2
-0.6
-0.2
-0.1
-0.3
carbon source
L-Leucine (C)
+0.2
-0.9
+0.1
-0.0
-0.3
nitrogen source
nitrite (N)
+0.1
-0.8
-0.5
-0.0
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-1.0
+0.4
-0.2
+0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.1
-0.8
+0.2
-0.1
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
+0.6
-0.5
-0.1
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
+0.5
-0.2
-0.4
-0.5
nitrogen source
L-Tryptophan (N)
+0.1
-0.6
+0.6
-0.0
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
-1.0
+0.4
-0.0
+0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.8
+0.3
+0.3
+0.3
carbon source
D,L-Lactate (C)
+0.3
-0.6
+0.4
+0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.7
-0.5
-0.3
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.6
+0.4
-0.3
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.5
+0.6
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.8
+0.4
-0.1
-0.2
carbon source
Heptanoic (C)
+0.2
+0.7
-0.2
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.4
+0.7
+0.3
+0.1
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