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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31425 and RR42_RS31430 are separated by 129 nucleotides
RR42_RS31430 and RR42_RS31435 are separated by 28 nucleotides
RR42_RS31435 and RR42_RS31440 are separated by 174 nucleotides
RR42_RS31440 and RR42_RS31445 are separated by 55 nucleotides
RR42_RS31425: RR42_RS31425 - chloroperoxidase, at 2,432,437 to 2,433,123
_RS31425
RR42_RS31430: RR42_RS31430 - amidohydrolase, at 2,433,253 to 2,435,124
_RS31430
RR42_RS31435: RR42_RS31435 - hypothetical protein, at 2,435,153 to 2,435,587
_RS31435
RR42_RS31440: RR42_RS31440 - ABC transporter substrate-binding protein, at 2,435,762 to 2,436,055
_RS31440
RR42_RS31445: RR42_RS31445 - porin, at 2,436,111 to 2,437,208
_RS31445
Group
Condition
RR42
_RS31425
RR42
_RS31430
RR42
_RS31435
RR42
_RS31440
RR42
_RS31445
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.4
-3.1
-0.4
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
+0.1
-2.0
+0.2
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.2
+0.2
-1.6
-0.8
-0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
+0.0
-1.7
+0.0
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.1
-1.7
-0.1
-0.3
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.7
-0.2
-0.7
-0.3
+0.0
carbon source
Carbon source D,L-Lactate 10 mM
-1.3
-0.1
-0.5
-0.0
+0.2
carbon source
Heptanoic (C)
-0.3
+0.0
-1.3
+0.0
-0.1
stress
R2A with Chloride 300 mM
-0.7
-0.1
-1.4
+0.3
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
-0.1
-0.5
-0.6
+0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.5
-1.3
-0.1
+0.1
stress
R2A with nitrate 200 mM
+0.2
-0.3
-1.3
+0.0
+0.0
nitrogen source
L-Valine (N)
-0.3
-0.1
-1.1
+0.2
+0.1
temperature
R2A 37C
-0.4
+0.3
-1.5
+0.2
+0.3
carbon source
Dodecandioic (C)
+0.5
-0.1
-1.2
-0.3
-0.1
carbon source
L-Malic (C)
+0.1
+0.3
-1.8
+0.2
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.7
+0.2
-1.7
-0.0
-0.2
carbon source
Disodium Glutarate (C)
+0.7
+0.1
-0.9
-0.8
+0.1
carbon source
succinate (C)
+0.4
-0.2
-0.8
-0.3
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.2
-0.9
+0.2
-0.1
carbon source
Valeric (C)
+0.5
+0.1
-1.3
+0.1
+0.1
lb
LB
-0.4
-0.1
+0.7
-0.4
+0.0
carbon source
propionate (C)
+0.7
-0.2
-0.2
-0.6
+0.1
carbon source
D-Gluconic Acid (C)
+0.6
-0.1
-0.8
+0.1
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.2
+0.8
+0.2
-0.1
carbon source
Disodium Glutarate (C)
+1.2
+0.0
-0.3
-0.6
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.4
+1.1
-0.2
+0.0
nitrogen source
Glucuronamide (N)
-0.2
+0.1
+1.1
-0.3
+0.2
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.0
+1.4
+0.1
+0.1
nitrogen source
L-Serine (N)
+0.6
-0.1
+0.7
-0.0
+0.3
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