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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31415 and RR42_RS31420 are separated by 34 nucleotides
RR42_RS31420 and RR42_RS31425 are separated by 470 nucleotides
RR42_RS31425 and RR42_RS31430 are separated by 129 nucleotides
RR42_RS31430 and RR42_RS31435 are separated by 28 nucleotides
RR42_RS31415: RR42_RS31415 - histidine kinase, at 2,425,780 to 2,431,278
_RS31415
RR42_RS31420: RR42_RS31420 - LuxR family transcriptional regulator, at 2,431,313 to 2,431,966
_RS31420
RR42_RS31425: RR42_RS31425 - chloroperoxidase, at 2,432,437 to 2,433,123
_RS31425
RR42_RS31430: RR42_RS31430 - amidohydrolase, at 2,433,253 to 2,435,124
_RS31430
RR42_RS31435: RR42_RS31435 - hypothetical protein, at 2,435,153 to 2,435,587
_RS31435
Group
Condition
RR42
_RS31415
RR42
_RS31420
RR42
_RS31425
RR42
_RS31430
RR42
_RS31435
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.3
-0.2
-0.4
-3.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.2
-0.7
+0.1
-2.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-0.3
-1.3
-0.1
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.4
-0.2
+0.2
-1.6
stress
R2A with Chloride 300 mM
+0.1
-0.0
-0.7
-0.1
-1.4
stress
R2A with Sisomicin 0.035 mg/ml
+0.0
+0.1
-0.5
+0.0
-1.7
carbon source
L-Malic (C)
-0.0
-0.5
+0.1
+0.3
-1.8
carbon source
Protocatechuic Acid (C)
-0.1
-0.2
+0.2
-0.5
-1.3
carbon source
Heptanoic (C)
+0.1
-0.2
-0.3
+0.0
-1.3
stress
R2A with nitrate 200 mM
-0.0
-0.2
+0.2
-0.3
-1.3
nitrogen source
L-Isoleucine (N)
-0.0
-0.5
-0.5
-0.1
-0.5
nitrogen source
L-Valine (N)
+0.0
-0.1
-0.3
-0.1
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.0
+0.2
-0.1
-1.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.1
-0.1
-0.7
-0.2
-0.7
carbon source
Octanoic (C)
+0.0
-0.7
-0.2
+0.2
-0.5
temperature
R2A 37C
+0.2
+0.2
-0.4
+0.3
-1.5
carbon source
Dodecandioic (C)
-0.0
-0.3
+0.5
-0.1
-1.2
carbon source
succinate (C)
-0.0
-0.3
+0.4
-0.2
-0.8
carbon source
Valeric (C)
-0.0
-0.1
+0.5
+0.1
-1.3
carbon source
D-Gluconic Acid (C)
-0.1
-0.5
+0.6
-0.1
-0.8
lb
LB
+0.0
-1.0
-0.4
-0.1
+0.7
carbon source
Disodium Glutarate (C)
-0.1
-0.3
+0.7
+0.1
-0.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
+0.4
+0.7
+0.2
-1.7
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
+0.5
-0.3
+0.2
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.2
-0.6
-0.2
+0.8
stress
R2A with Nickel (II) chloride 0.25 mM
-0.0
-0.1
-0.2
-0.4
+1.1
carbon source
Disodium Glutarate (C)
-0.1
-0.1
+1.2
+0.0
-0.3
nitrogen source
Glucuronamide (N)
+0.2
-0.4
-0.2
+0.1
+1.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.3
+0.8
-0.4
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.4
-0.2
-0.0
+1.4
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