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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31385 and RR42_RS31390 are separated by 228 nucleotides
RR42_RS31390 and RR42_RS31395 are separated by 371 nucleotides
RR42_RS31395 and RR42_RS31400 are separated by 36 nucleotides
RR42_RS31400 and RR42_RS31405 are separated by 387 nucleotides
RR42_RS31385: RR42_RS31385 - GntR family transcriptional regulator, at 2,417,989 to 2,418,708
_RS31385
RR42_RS31390: RR42_RS31390 - 2-dehydropantoate 2-reductase, at 2,418,937 to 2,419,911
_RS31390
RR42_RS31395: RR42_RS31395 - GntR family transcriptional regulator, at 2,420,283 to 2,420,975
_RS31395
RR42_RS31400: RR42_RS31400 - GntR family transcriptional regulator, at 2,421,012 to 2,421,890
_RS31400
RR42_RS31405: RR42_RS31405 - hypothetical protein, at 2,422,278 to 2,422,463
_RS31405
Group
Condition
RR42
_RS31385
RR42
_RS31390
RR42
_RS31395
RR42
_RS31400
RR42
_RS31405
carbon source
Pimelic (C)
-2.3
+0.2
-0.1
-0.1
N.D.
carbon source
Protocatechuic Acid (C)
-1.6
-0.2
-0.0
-0.3
N.D.
carbon source
Pimelic (C)
-2.4
+0.1
+0.2
-0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.7
-0.1
-0.2
-0.0
N.D.
carbon source
Protocatechuic Acid (C)
-1.0
+0.2
-0.6
-0.2
N.D.
carbon source
Disodium Glutarate (C)
-1.3
+0.3
-0.2
-0.1
N.D.
nitrogen source
nitrite (N)
-1.0
+0.2
-0.4
-0.1
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
-0.3
-0.1
-0.1
N.D.
stress
R2A with nitrate 200 mM
-0.5
-0.2
-0.3
-0.1
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
-0.6
-0.3
+0.0
-0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
-0.4
+0.3
+0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
+0.1
-0.4
+0.2
N.D.
lb
LB
-0.4
+0.3
-0.5
+0.0
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.3
+0.3
+0.0
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
-0.3
-0.4
+0.0
N.D.
carbon source
L-Leucine (C)
-1.0
+0.3
+0.3
+0.0
N.D.
carbon source
L-Leucine (C)
-0.7
+0.3
-0.1
+0.1
N.D.
carbon source
Disodium Glutarate (C)
-0.7
+0.5
-0.2
-0.0
N.D.
carbon source
adipate (C)
-0.5
+0.3
+0.1
-0.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.5
-0.2
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.6
+0.4
-0.1
+0.1
N.D.
carbon source
Ethanol (C)
-0.6
+0.3
+0.1
+0.1
N.D.
carbon source
Azelaic (C)
-0.4
+0.3
+0.3
-0.2
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.5
+0.4
-0.1
N.D.
carbon source
Octanoic (C)
-0.3
+0.1
+0.4
-0.2
N.D.
carbon source
succinate (C)
-0.4
+0.2
+0.4
+0.1
N.D.
stress
R2A with Cephalothin 0.25 mg/ml
-0.4
+0.1
+0.5
+0.1
N.D.
carbon source
Heptanoic (C)
-0.3
+0.4
+0.5
-0.0
N.D.
nitrogen source
L-Serine (N)
+0.5
+0.2
+0.2
+0.0
N.D.
nitrogen source
casaminos (N)
+0.2
+0.2
+0.6
+0.1
N.D.
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