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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31360 and RR42_RS31365 are separated by 130 nucleotides
RR42_RS31365 and RR42_RS31370 are separated by 23 nucleotides
RR42_RS31370 and RR42_RS31375 are separated by 466 nucleotides
RR42_RS31375 and RR42_RS31380 are separated by 1 nucleotides
RR42_RS31360: RR42_RS31360 - CoA-binding protein, at 2,410,056 to 2,412,185
_RS31360
RR42_RS31365: RR42_RS31365 - formyl-CoA transferase, at 2,412,316 to 2,413,545
_RS31365
RR42_RS31370: RR42_RS31370 - acetolactate synthase, at 2,413,569 to 2,415,323
_RS31370
RR42_RS31375: RR42_RS31375 - succinyl-CoA synthetase subunit beta, at 2,415,790 to 2,417,022
_RS31375
RR42_RS31380: RR42_RS31380 - succinate--CoA ligase, at 2,417,024 to 2,417,908
_RS31380
Group
Condition
RR42
_RS31360
RR42
_RS31365
RR42
_RS31370
RR42
_RS31375
RR42
_RS31380
lb
LB
-0.4
-0.1
-0.6
-0.4
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.2
-0.3
-0.5
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
-0.3
+0.1
-0.6
carbon source
Octanoic (C)
-0.2
-0.3
+0.0
-0.1
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
-0.0
-0.2
-0.2
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.0
+0.2
-0.1
-0.6
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.0
-0.1
-0.5
-0.2
stress
R2A with Chlorite 4 mM
+0.2
-0.1
-0.1
-0.3
-0.4
nitrogen source
L-Phenylalanine (N)
+0.1
-0.1
-0.1
-0.0
-0.5
carbon source
L-Leucine (C)
+0.1
-0.2
-0.1
-0.3
-0.2
nitrogen source
Glucuronamide (N)
-0.0
-0.5
+0.0
+0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.2
-0.1
-0.3
-0.3
carbon source
L-Lactate (C)
+0.1
-0.2
-0.3
-0.0
-0.2
nitrogen source
L-Asparagine (N)
-0.1
-0.1
+0.2
-0.3
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.1
+0.2
-0.5
+0.0
stress
R2A with Chloride 300 mM
+0.2
-0.1
-0.1
-0.1
-0.4
carbon source
propionate (C)
+0.2
-0.3
+0.1
-0.2
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.1
+0.3
+0.0
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
-0.4
-0.2
-0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+0.2
+0.2
-0.0
-0.4
carbon source
Heptanoic (C)
-0.2
+0.0
+0.3
-0.0
-0.4
carbon source
Protocatechuic Acid (C)
-0.4
-0.0
+0.3
-0.3
+0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.2
+0.4
-0.2
-0.2
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.1
-0.1
+0.2
-0.2
carbon source
Disodium Glutarate (C)
-0.1
+0.1
+0.3
+0.1
-0.4
stress
R2A with Zinc 0.1 mM
-0.2
+0.2
+0.4
-0.1
-0.1
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
+0.3
-0.2
+0.2
carbon source
Hexanoic (C)
+0.1
+0.0
+0.4
+0.2
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.2
+0.2
+0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.1
-0.1
+0.9
+0.1
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