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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31285 and RR42_RS31290 overlap by 96 nucleotides
RR42_RS31290 and RR42_RS31295 are separated by 265 nucleotides
RR42_RS31295 and RR42_RS31300 are separated by 257 nucleotides
RR42_RS31300 and RR42_RS31305 are separated by 168 nucleotides
RR42_RS31285: RR42_RS31285 - XRE family transcriptional regulator, at 2,393,583 to 2,393,816
_RS31285
RR42_RS31290: RR42_RS31290 - XRE family transcriptional regulator, at 2,393,721 to 2,393,975
_RS31290
RR42_RS31295: RR42_RS31295 - XRE family transcriptional regulator, at 2,394,241 to 2,394,849
_RS31295
RR42_RS31300: RR42_RS31300 - TetR family transcriptional regulator, at 2,395,107 to 2,396,009
_RS31300
RR42_RS31305: RR42_RS31305 - NADPH:quinone reductase, at 2,396,178 to 2,397,194
_RS31305
Group
Condition
RR42
_RS31285
RR42
_RS31290
RR42
_RS31295
RR42
_RS31300
RR42
_RS31305
nitrogen source
L-Leucine (N)
-2.4
-2.2
-0.2
+0.3
-0.0
carbon source
L-Leucine (C)
-1.5
-1.0
-0.1
-0.4
-0.3
nitrogen source
D-Alanine (N)
-1.5
-0.8
-0.1
-0.3
-0.2
carbon source
L-Proline (C)
-1.2
-1.3
-0.2
+0.2
-0.1
nitrogen source
L-Valine (N)
-1.2
-0.9
-0.1
-0.0
-0.2
temperature
R2A 37C
-0.6
-0.6
-0.0
-1.2
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.9
-0.8
-0.1
-0.3
-0.3
carbon source
L-Glutamine (C)
-1.0
-1.0
+0.2
-0.2
-0.0
nitrogen source
L-Tryptophan (N)
-1.6
-0.4
+0.0
+0.1
-0.2
nitrogen source
L-Isoleucine (N)
-1.4
-0.6
-0.2
+0.3
-0.1
carbon source
L-Tryptophan (C)
-1.4
-0.5
-0.2
+0.3
-0.2
stress
R2A with A22 0.01 mg/ml
+0.5
-1.8
-0.0
-0.4
-0.2
carbon source
L-Phenylalanine (C)
-1.0
-0.8
-0.0
+0.3
-0.2
lb
LB
+0.4
-0.3
+0.1
-2.0
+0.4
carbon source
L-Malic (C)
-1.2
-0.5
-0.0
+0.7
-0.2
carbon source
succinate (C)
-1.0
-0.1
-0.3
+0.6
-0.2
carbon source
Suberic (C)
-1.7
+0.4
-0.1
+0.7
+0.3
carbon source
Heptanoic (C)
-0.8
-0.6
+0.3
+0.3
+0.5
stress
R2A with copper (II) chloride 0.25 mM
-1.2
+0.2
-0.0
+1.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+1.2
+0.5
-0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.1
+0.6
+0.1
-0.4
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.6
+1.1
+0.2
-0.6
-0.5
stress
R2A with Sisomicin 0.035 mg/ml
+1.1
+0.7
+0.2
+0.1
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.5
+0.5
+1.7
+0.2
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.3
+1.1
+0.3
-0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.9
+1.2
+0.6
+0.0
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
+1.5
+0.5
+0.1
+0.3
+0.5
carbon source
Protocatechuic Acid (C)
+1.2
+1.2
+0.4
+0.2
+0.0
stress
R2A with Lomefloxacin 0.00075 mM
+2.1
+2.4
+0.8
+0.9
-0.2
stress
R2A with Lomefloxacin 0.001 mM
+3.0
+4.8
+0.8
-0.8
-0.1
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