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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31265 and RR42_RS31270 are separated by 622 nucleotides
RR42_RS31270 and RR42_RS31275 are separated by 105 nucleotides
RR42_RS31275 and RR42_RS31280 are separated by 16 nucleotides
RR42_RS31280 and RR42_RS31285 are separated by 528 nucleotides
RR42_RS31265: RR42_RS31265 - hypothetical protein, at 2,388,742 to 2,389,470
_RS31265
RR42_RS31270: RR42_RS31270 - fumarylacetoacetase, at 2,390,093 to 2,391,355
_RS31270
RR42_RS31275: RR42_RS31275 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
(from data)
, at 2,391,461 to 2,392,810
_RS31275
RR42_RS31280: RR42_RS31280 - hypothetical protein, at 2,392,827 to 2,393,054
_RS31280
RR42_RS31285: RR42_RS31285 - XRE family transcriptional regulator, at 2,393,583 to 2,393,816
_RS31285
Group
Condition
RR42
_RS31265
RR42
_RS31270
RR42
_RS31275
RR42
_RS31280
RR42
_RS31285
carbon source
L-Phenylalanine (C)
+0.1
-3.4
-2.3
-1.5
-1.0
nitrogen source
L-Phenylalanine (N)
-0.2
-3.1
-1.9
-0.6
-0.8
nitrogen source
L-Leucine (N)
-0.0
-0.3
-0.1
-0.1
-2.4
stress
R2A with Bacitracin 0.5 mg/ml
-0.3
-0.2
-0.9
-0.2
-0.9
stress
R2A with Cobalt chloride 0.5 mM
-0.7
-1.2
+0.0
-0.4
-0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.4
+0.1
-0.8
-0.0
-1.2
carbon source
Suberic (C)
-0.3
-0.3
-0.2
+0.1
-1.7
nitrogen source
D-Alanine (N)
-0.0
-0.4
-0.1
-0.2
-1.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.0
-0.1
-0.4
-1.3
carbon source
L-Leucine (C)
+0.2
-0.5
+0.0
-0.3
-1.5
carbon source
Ethanol (C)
+0.1
-0.6
+0.0
-0.4
-1.1
nitrogen source
L-Tryptophan (N)
+0.1
-0.1
+0.2
-0.4
-1.6
carbon source
Azelaic (C)
-0.3
-0.8
+0.4
-0.1
-1.0
carbon source
L-Malic (C)
-0.5
-0.2
-0.1
+0.2
-1.2
carbon source
L-Proline (C)
+0.1
-0.2
+0.2
-0.4
-1.2
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.9
-0.5
-0.1
+0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-1.1
+0.8
+0.6
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
-0.4
+0.0
-0.4
+1.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+1.3
+0.3
-0.1
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+1.6
+0.6
+0.0
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+1.0
+0.3
+0.6
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+1.6
+0.3
+0.2
+0.8
stress
R2A with Zinc 0.1 mM
+0.2
-0.4
+2.2
+0.7
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+1.4
+0.4
+0.4
+1.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+1.4
+0.3
+0.1
+1.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+1.7
+0.8
-0.1
+0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+1.4
+0.6
+0.2
+1.1
lb
LB
-0.1
+2.4
+0.7
+0.6
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+1.8
+0.2
+0.5
+2.1
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+1.1
-0.1
+0.2
+3.0
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