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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS31055 and RR42_RS31060 are separated by 90 nucleotides
RR42_RS31060 and RR42_RS31065 are separated by 250 nucleotides
RR42_RS31065 and RR42_RS31070 are separated by 58 nucleotides
RR42_RS31070 and RR42_RS31075 are separated by 323 nucleotides
RR42_RS31055: RR42_RS31055 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,347,160 to 2,348,086
_RS31055
RR42_RS31060: RR42_RS31060 - diguanylate cyclase, at 2,348,177 to 2,349,748
_RS31060
RR42_RS31065: RR42_RS31065 - GntR family transcriptional regulator, at 2,349,999 to 2,350,673
_RS31065
RR42_RS31070: RR42_RS31070 - dihydroxy-acid dehydratase, at 2,350,732 to 2,352,462
_RS31070
RR42_RS31075: RR42_RS31075 - MFS transporter, at 2,352,786 to 2,353,814
_RS31075
Group
Condition
RR42
_RS31055
RR42
_RS31060
RR42
_RS31065
RR42
_RS31070
RR42
_RS31075
stress
R2A with Lomefloxacin 0.001 mM
-2.1
+0.0
-0.5
+0.1
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.1
-1.1
+0.0
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
-0.1
-0.5
-0.1
+0.1
carbon source
L-Proline (C)
-0.3
-0.0
-0.9
-0.1
+0.2
nitrogen source
L-Asparagine (N)
-0.5
-0.1
-0.6
-0.1
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.3
-0.1
-0.5
-0.3
+0.1
carbon source
L-Alanine (C)
-0.5
-0.1
-0.4
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
-1.1
+0.3
+0.0
+0.0
-0.2
nitrogen source
L-Glutamine (N)
-1.2
-0.1
+0.0
+0.3
+0.1
carbon source
D-Lactate (C)
-0.4
-0.1
-0.5
-0.1
+0.2
lb
LB
-0.6
+0.2
-0.6
+0.2
+0.0
nitrogen source
casaminos (N)
-0.4
-0.2
+0.3
+0.1
-0.3
stress
R2A with Cephalothin 0.25 mg/ml
-0.9
-0.1
+0.5
+0.1
+0.0
carbon source
L-Tryptophan (C)
+0.5
+0.1
-0.5
-0.3
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.6
-0.2
-0.0
-0.3
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
-0.2
+0.6
-0.0
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.0
-0.8
+0.4
-0.0
carbon source
Protocatechuic Acid (C)
-0.4
+0.5
-0.1
+0.1
+0.1
carbon source
Disodium Glutarate (C)
+0.4
-0.3
-0.2
+0.4
-0.0
carbon source
Suberic (C)
+0.6
-0.1
-0.6
+0.2
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.4
+0.0
+0.6
+0.4
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
+0.1
+0.3
+0.2
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.6
+0.0
+0.6
-0.1
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.6
-0.1
+0.6
+0.0
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-0.0
+0.7
+0.2
-0.3
carbon source
a-Ketoglutaric (C)
+0.4
-0.1
+0.7
+0.2
-0.1
carbon source
Valeric (C)
+0.5
+0.0
+0.7
+0.1
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.8
-0.1
+0.1
+0.3
stress
R2A with Zinc 0.1 mM
+0.5
+0.2
+0.9
+0.0
-0.3
temperature
R2A 37C
+0.6
+0.2
+0.6
-0.0
+0.2
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