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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30985 and RR42_RS30990 are separated by 250 nucleotides
RR42_RS30990 and RR42_RS30995 are separated by 60 nucleotides
RR42_RS30995 and RR42_RS31000 are separated by 26 nucleotides
RR42_RS31000 and RR42_RS31005 are separated by 80 nucleotides
RR42_RS30985: RR42_RS30985 - histone-like nucleoid-structuring protein, at 2,333,850 to 2,334,182
_RS30985
RR42_RS30990: RR42_RS30990 - membrane protein, at 2,334,433 to 2,334,831
_RS30990
RR42_RS30995: RR42_RS30995 - hypothetical protein, at 2,334,892 to 2,335,635
_RS30995
RR42_RS31000: RR42_RS31000 - glutathionylspermidine synthase, at 2,335,662 to 2,336,834
_RS31000
RR42_RS31005: RR42_RS31005 - homospermidine synthase, at 2,336,915 to 2,338,240
_RS31005
Group
Condition
RR42
_RS30985
RR42
_RS30990
RR42
_RS30995
RR42
_RS31000
RR42
_RS31005
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.5
-0.4
-0.3
+0.0
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.4
+0.1
-0.2
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
-0.3
-0.1
-0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.4
-0.2
-0.1
+0.1
temperature
R2A 37C
N.D.
-0.3
+0.1
+0.1
-0.3
nitrogen source
L-Tryptophan (N)
N.D.
-0.2
-0.0
-0.3
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.0
-0.6
+0.3
+0.1
lb
LB
N.D.
-0.4
-0.3
+0.1
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.4
-0.3
-0.1
-0.1
nitrogen source
L-Threonine (N)
N.D.
-0.3
-0.1
+0.1
+0.3
stress
R2A with Zinc 0.1 mM
N.D.
+0.4
-0.1
-0.3
+0.2
carbon source
Valeric (C)
N.D.
-0.2
-0.0
+0.4
+0.1
carbon source
adipate (C)
N.D.
+0.1
-0.3
+0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
-0.2
-0.1
+0.3
+0.2
carbon source
Suberic (C)
N.D.
-0.3
-0.0
+0.2
+0.4
temperature
R2A 23C
N.D.
+0.3
+0.1
+0.1
-0.2
stress
R2A with Chlorite 4 mM
N.D.
+0.4
+0.1
-0.2
+0.0
nitrogen source
L-Serine (N)
N.D.
+0.2
-0.2
-0.1
+0.4
nitrogen source
L-Glutamine (N)
N.D.
+0.6
+0.1
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
N.D.
+0.4
-0.0
+0.2
-0.1
carbon source
D,L-Lactate (C)
N.D.
+0.4
-0.3
+0.1
+0.2
carbon source
L-Alanine (C)
N.D.
+0.2
+0.1
-0.1
+0.3
carbon source
L-Glutamine (C)
N.D.
-0.1
+0.2
-0.0
+0.4
carbon source
D-Lactate (C)
N.D.
+0.4
+0.2
-0.1
+0.2
carbon source
L-Glutamine (C)
N.D.
+0.3
+0.3
-0.1
+0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
+0.2
+0.3
+0.1
+0.1
carbon source
Protocatechuic Acid (C)
N.D.
+0.5
-0.1
+0.3
+0.0
carbon source
Valeric (C)
N.D.
+0.3
+0.3
+0.2
+0.0
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.3
-0.0
+0.7
-0.1
carbon source
adipate (C)
N.D.
+0.3
+0.1
+0.3
+0.2
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