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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30975 and RR42_RS30980 are separated by 65 nucleotides
RR42_RS30980 and RR42_RS30985 are separated by 19 nucleotides
RR42_RS30985 and RR42_RS30990 are separated by 250 nucleotides
RR42_RS30990 and RR42_RS30995 are separated by 60 nucleotides
RR42_RS30975: RR42_RS30975 - blue copper protein, at 2,332,896 to 2,333,405
_RS30975
RR42_RS30980: RR42_RS30980 - hypothetical protein, at 2,333,471 to 2,333,830
_RS30980
RR42_RS30985: RR42_RS30985 - histone-like nucleoid-structuring protein, at 2,333,850 to 2,334,182
_RS30985
RR42_RS30990: RR42_RS30990 - membrane protein, at 2,334,433 to 2,334,831
_RS30990
RR42_RS30995: RR42_RS30995 - hypothetical protein, at 2,334,892 to 2,335,635
_RS30995
Group
Condition
RR42
_RS30975
RR42
_RS30980
RR42
_RS30985
RR42
_RS30990
RR42
_RS30995
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-2.7
N.D.
-0.0
+0.4
stress
R2A with copper (II) chloride 0.25 mM
-1.4
-0.0
N.D.
+0.1
-0.2
carbon source
L-Asparagine (C)
-1.6
+0.3
N.D.
+0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
-1.3
N.D.
-0.4
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-1.6
N.D.
+0.2
-0.0
lb
LB
-1.1
+0.6
N.D.
-0.4
-0.3
carbon source
Suberic (C)
+0.3
-1.2
N.D.
-0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.9
-0.3
N.D.
+0.0
+0.1
carbon source
Protocatechuic Acid (C)
+0.0
-1.5
N.D.
+0.5
-0.1
nitrogen source
L-Lysine (N)
+0.3
-1.3
N.D.
-0.1
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
-1.2
N.D.
-0.3
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-0.9
N.D.
-0.2
+0.1
carbon source
Protocatechuic Acid (C)
+0.1
-1.3
N.D.
+0.4
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
-0.7
N.D.
+0.3
+0.2
stress
R2A with Cephalothin 0.25 mg/ml
+0.4
-0.8
N.D.
-0.1
+0.0
nitrogen source
L-Serine (N)
-0.1
-0.9
N.D.
+0.4
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.7
+0.4
N.D.
+0.0
-0.1
carbon source
Valeric (C)
+0.1
-0.9
N.D.
+0.3
+0.3
nitrogen source
L-Glutamine (N)
-0.5
-0.4
N.D.
+0.6
+0.1
carbon source
Azelaic (C)
+0.6
-1.0
N.D.
+0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.6
-0.2
N.D.
-0.0
-0.6
carbon source
Valeric (C)
+0.8
-0.6
N.D.
-0.2
-0.0
carbon source
butyrate (C)
-0.6
+0.7
N.D.
-0.1
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.8
+0.6
N.D.
+0.3
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
-0.6
N.D.
+0.4
+0.0
carbon source
Heptanoic (C)
+0.7
-0.4
N.D.
+0.2
+0.1
carbon source
Disodium Glutarate (C)
+0.8
-0.4
N.D.
+0.2
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+1.0
+0.4
N.D.
-0.4
+0.1
stress
R2A with Zinc 0.1 mM
+0.4
+0.5
N.D.
+0.4
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+1.0
N.D.
-0.1
+0.0
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RR42_RS30985
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RR42_RS30995
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