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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30930 and RR42_RS30935 are separated by 171 nucleotides
RR42_RS30935 and RR42_RS30940 are separated by 74 nucleotides
RR42_RS30940 and RR42_RS30945 are separated by 18 nucleotides
RR42_RS30945 and RR42_RS30950 are separated by 14 nucleotides
RR42_RS30930: RR42_RS30930 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 2,320,344 to 2,322,734
_RS30930
RR42_RS30935: RR42_RS30935 - hypothetical protein, at 2,322,906 to 2,323,310
_RS30935
RR42_RS30940: RR42_RS30940 - cobalt-zinc-cadmium resistance protein, at 2,323,385 to 2,324,653
_RS30940
RR42_RS30945: RR42_RS30945 - cytochrome C peroxidase, at 2,324,672 to 2,325,958
_RS30945
RR42_RS30950: RR42_RS30950 - cation transporter, at 2,325,973 to 2,329,098
_RS30950
Group
Condition
RR42
_RS30930
RR42
_RS30935
RR42
_RS30940
RR42
_RS30945
RR42
_RS30950
stress
R2A with Zinc 0.1 mM
-4.1
-2.4
-3.1
-5.3
-4.1
stress
R2A with Cobalt chloride 0.5 mM
-0.6
+0.4
-2.6
-3.8
-3.4
stress
R2A with Cobalt chloride 0.3 mM
-2.0
-0.3
-0.6
-1.2
-0.8
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
-0.1
-1.2
-0.6
-0.8
stress
R2A with Bacitracin 0.5 mg/ml
-1.1
-0.1
-0.6
-0.7
-0.5
r2a
R2A
-0.7
-0.4
-0.4
-0.8
-0.8
carbon source
Octanoic (C)
+0.1
-0.8
-0.9
-0.5
-0.8
carbon source
Azelaic (C)
-1.7
+0.0
-0.4
-0.3
-0.5
r2a
R2A
-0.5
+0.2
-0.9
-0.8
-0.7
carbon source
Suberic (C)
-0.8
-0.4
-0.8
-0.1
-0.3
carbon source
Pimelic (C)
-0.9
-0.1
-0.3
-0.5
-0.3
carbon source
Octanoic (C)
-0.4
-0.5
-0.6
-0.2
-0.5
carbon source
propionate (C)
-1.6
-0.1
-0.3
+0.2
-0.3
carbon source
Valeric (C)
-1.4
-0.1
-0.4
+0.4
-0.4
carbon source
succinate (C)
-1.4
-0.2
-0.2
+0.2
-0.4
r2a
R2A
-0.4
+0.2
-0.6
-0.6
-0.4
carbon source
Dodecandioic (C)
-1.4
-0.2
+0.3
+0.2
-0.2
carbon source
Suberic (C)
-0.8
+0.0
-0.3
+0.6
-0.7
carbon source
adipate (C)
-0.6
+0.2
-0.8
+0.5
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+1.0
-0.8
+0.1
-0.6
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.5
+1.1
-0.1
+0.4
+0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.5
+0.9
+0.2
+0.4
+0.3
lb
LB
-4.1
+1.1
+1.3
+1.6
+1.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.0
-0.3
-0.6
+0.1
+0.3
carbon source
Protocatechuic Acid (C)
-0.4
+0.3
+0.4
+0.7
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.0
-0.1
-0.2
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.4
+0.4
-0.2
-0.2
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.6
+0.6
+0.7
+0.8
+0.9
carbon source
Protocatechuic Acid (C)
-1.2
+0.6
+0.8
+1.4
+0.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+2.7
-0.1
+0.5
-0.3
-0.0
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