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Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30900 and RR42_RS30905 are separated by 48 nucleotides
RR42_RS30905 and RR42_RS30910 overlap by 22 nucleotides
RR42_RS30910 and RR42_RS30915 overlap by 13 nucleotides
RR42_RS30915 and RR42_RS30920 overlap by 1 nucleotides
RR42_RS30900: RR42_RS30900 - 4-amino-4-deoxy-L-arabinose transferase, at 2,314,697 to 2,315,068
_RS30900
RR42_RS30905: RR42_RS30905 - aminotransferase DegT, at 2,315,117 to 2,316,280
_RS30905
RR42_RS30910: RR42_RS30910 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,316,259 to 2,317,251
_RS30910
RR42_RS30915: RR42_RS30915 - formyltransferase, at 2,317,239 to 2,318,198
_RS30915
RR42_RS30920: RR42_RS30920 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 2,318,198 to 2,319,169
_RS30920
Group
Condition
RR42
_RS30900
RR42
_RS30905
RR42
_RS30910
RR42
_RS30915
RR42
_RS30920
stress
R2A with nitrate 150 mM
N.D.
-0.9
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.8
N.D.
N.D.
N.D.
nitrogen source
nitrite (N)
N.D.
-0.7
N.D.
N.D.
N.D.
carbon source
Suberic (C)
N.D.
-0.6
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.6
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
-0.6
N.D.
N.D.
N.D.
nitrogen source
D-Alanine (N)
N.D.
-0.6
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
-0.6
N.D.
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
N.D.
-0.5
N.D.
N.D.
N.D.
stress
R2A with nitrate 200 mM
N.D.
-0.5
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.4
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.4
N.D.
N.D.
N.D.
nitrogen source
Glycine (N)
N.D.
-0.4
N.D.
N.D.
N.D.
carbon source
propionate (C)
N.D.
+0.4
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
N.D.
+0.4
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
N.D.
+0.4
N.D.
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
N.D.
+0.4
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
+0.4
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.5
N.D.
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
N.D.
+0.5
N.D.
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
N.D.
+0.6
N.D.
N.D.
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.6
N.D.
N.D.
N.D.
stress
R2A with Chloride 300 mM
N.D.
+0.6
N.D.
N.D.
N.D.
carbon source
adipate (C)
N.D.
+0.6
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
+0.7
N.D.
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
+0.8
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
+1.0
N.D.
N.D.
N.D.
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