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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30655 and RR42_RS30660 are separated by 145 nucleotides
RR42_RS30660 and RR42_RS30665 are separated by 280 nucleotides
RR42_RS30665 and RR42_RS30670 are separated by 72 nucleotides
RR42_RS30670 and RR42_RS30675 are separated by 778 nucleotides
RR42_RS30655: RR42_RS30655 - LysR family transcriptional regulator, at 2,252,026 to 2,252,949
_RS30655
RR42_RS30660: RR42_RS30660 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 2,253,095 to 2,255,482
_RS30660
RR42_RS30665: RR42_RS30665 - TonB-dependent receptor, at 2,255,763 to 2,257,874
_RS30665
RR42_RS30670: RR42_RS30670 - membrane protein, at 2,257,947 to 2,259,371
_RS30670
RR42_RS30675: RR42_RS30675 - hypothetical protein, at 2,260,150 to 2,260,785
_RS30675
Group
Condition
RR42
_RS30655
RR42
_RS30660
RR42
_RS30665
RR42
_RS30670
RR42
_RS30675
nitrogen source
L-Threonine (N)
-6.3
-5.3
+0.1
+0.1
-0.4
carbon source
L-Glutamine (C)
-6.1
-4.5
+0.1
+0.1
-0.5
carbon source
succinate (C)
-5.5
-4.8
-0.1
-0.1
-0.3
nitrogen source
D-Alanine (N)
-6.5
-4.5
+0.0
-0.0
+0.2
carbon source
Octanoic (C)
-5.8
-4.1
-0.1
-0.0
-0.5
carbon source
L-Lactate (C)
-6.1
-4.6
-0.0
-0.0
+0.3
nitrogen source
L-Phenylalanine (N)
-6.3
-4.1
+0.1
-0.1
-0.1
carbon source
D-Fructose (C)
-5.8
-4.6
+0.1
+0.1
-0.3
carbon source
D-Lactate (C)
-6.3
-4.4
+0.1
+0.1
+0.1
carbon source
L-Tryptophan (C)
-6.2
-4.2
-0.1
+0.0
+0.0
carbon source
L-Malic (C)
-6.5
-4.3
+0.1
+0.1
+0.2
nitrogen source
L-Tryptophan (N)
-5.8
-4.9
-0.0
-0.0
+0.5
carbon source
L-Histidine (C)
-6.4
-3.8
-0.1
+0.0
-0.0
carbon source
Valeric (C)
-5.6
-4.2
+0.1
-0.1
-0.4
carbon source
L-Tryptophan (C)
-6.3
-4.0
-0.0
-0.0
+0.1
carbon source
succinate (C)
-6.2
-4.1
-0.0
-0.0
+0.2
carbon source
D,L-Lactate (C)
-5.8
-4.1
+0.1
+0.1
-0.5
nitrogen source
L-Asparagine (N)
-6.1
-4.1
-0.0
+0.0
+0.1
carbon source
D-Lactate (C)
-6.2
-4.1
+0.0
+0.1
+0.2
carbon source
pyruvate (C)
-6.6
-4.2
+0.2
+0.2
+0.4
carbon source
L-Malic (C)
-5.7
-4.5
+0.1
+0.0
+0.2
nitrogen source
Glycine (N)
-6.1
-4.0
-0.1
-0.0
+0.2
carbon source
L-Glutamine (C)
-6.1
-4.0
+0.1
+0.1
-0.0
carbon source
a-Ketoglutaric (C)
-5.9
-4.5
+0.1
+0.2
+0.2
nitrogen source
nitrite (N)
-6.6
-3.6
-0.0
-0.1
+0.5
carbon source
succinate (C)
-5.7
-4.4
+0.1
+0.0
+0.2
nitrogen source
L-Citrulline (N)
-6.0
-3.8
+0.1
-0.2
+0.4
carbon source
pyruvate (C)
-5.4
-4.5
+0.1
+0.0
+0.4
carbon source
L-Threonine (C)
-6.0
-3.8
+0.1
+0.2
+0.4
carbon source
D,L-Lactate (C)
-5.9
-3.8
-0.0
+0.3
+0.4
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