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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30625 and RR42_RS30630 are separated by 16 nucleotides
RR42_RS30630 and RR42_RS30635 are separated by 172 nucleotides
RR42_RS30635 and RR42_RS30640 are separated by 54 nucleotides
RR42_RS30640 and RR42_RS30645 are separated by 182 nucleotides
RR42_RS30625: RR42_RS30625 - cob(II)yrinic acid a,c-diamide reductase, at 2,247,389 to 2,248,054
_RS30625
RR42_RS30630: RR42_RS30630 - AsnC family transcriptional regulator, at 2,248,071 to 2,248,541
_RS30630
RR42_RS30635: RR42_RS30635 - hypothetical protein, at 2,248,714 to 2,249,034
_RS30635
RR42_RS30640: RR42_RS30640 - DNA mismatch repair protein MutT, at 2,249,089 to 2,249,802
_RS30640
RR42_RS30645: RR42_RS30645 - membrane protease subunit, stomatin/prohibitin, at 2,249,985 to 2,251,016
_RS30645
Group
Condition
RR42
_RS30625
RR42
_RS30630
RR42
_RS30635
RR42
_RS30640
RR42
_RS30645
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.4
N.D.
-4.3
-0.2
nitrogen source
L-Glutamine (N)
+0.1
-0.1
N.D.
-4.4
+0.0
carbon source
L-Asparagine (C)
-0.1
-0.2
N.D.
-3.4
-0.2
nitrogen source
L-Threonine (N)
-0.4
-0.1
N.D.
-2.9
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.4
N.D.
-4.0
-0.1
nitrogen source
nitrite (N)
+0.3
-0.1
N.D.
-3.5
+0.0
nitrogen source
L-Asparagine (N)
+0.3
-0.2
N.D.
-3.2
+0.0
carbon source
L-Malic (C)
-0.2
-0.1
N.D.
-2.9
+0.1
nitrogen source
L-Valine (N)
-0.2
-1.7
N.D.
-0.9
-0.1
carbon source
succinate (C)
-0.2
-0.4
N.D.
-2.4
+0.0
carbon source
L-Asparagine (C)
-0.2
+0.2
N.D.
-2.7
-0.3
nitrogen source
L-Phenylalanine (N)
-0.2
+0.4
N.D.
-2.7
-0.3
carbon source
Octanoic (C)
+0.1
-0.1
N.D.
-2.7
-0.1
carbon source
Heptanoic (C)
+0.3
-0.0
N.D.
-2.9
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
N.D.
-2.2
+0.0
carbon source
D,L-Lactate (C)
+0.1
-0.4
N.D.
-2.3
+0.1
carbon source
Azelaic (C)
+0.3
+0.0
N.D.
-2.5
-0.3
carbon source
L-Lactate (C)
+0.2
-0.3
N.D.
-2.2
+0.0
carbon source
Octanoic (C)
+0.5
+0.0
N.D.
-2.3
-0.2
carbon source
L-Malic (C)
+0.3
+0.2
N.D.
-2.3
-0.2
carbon source
Dodecandioic (C)
+0.7
-0.2
N.D.
-2.3
-0.1
carbon source
Dodecandioic (C)
+0.5
-0.1
N.D.
-2.4
+0.2
carbon source
succinate (C)
+0.5
+0.3
N.D.
-2.2
-0.3
carbon source
L-Lactate (C)
+0.6
+0.2
N.D.
-2.5
-0.1
carbon source
succinate (C)
+0.6
-0.1
N.D.
-1.8
-0.3
carbon source
Hexanoic (C)
+0.6
-0.3
N.D.
-1.9
+0.1
carbon source
Heptanoic (C)
+0.6
+0.1
N.D.
-2.1
-0.1
carbon source
D,L-Lactate (C)
+0.6
+0.3
N.D.
-2.1
+0.0
carbon source
L-Threonine (C)
+0.8
+0.1
N.D.
-1.6
-0.2
carbon source
Protocatechuic Acid (C)
+1.0
+0.1
N.D.
-1.2
-0.2
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