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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30595 and RR42_RS30600 are separated by 149 nucleotides
RR42_RS30600 and RR42_RS30605 are separated by 351 nucleotides
RR42_RS30605 and RR42_RS30610 are separated by 105 nucleotides
RR42_RS30610 and RR42_RS30615 are separated by 57 nucleotides
RR42_RS30595: RR42_RS30595 - hypothetical protein, at 2,241,552 to 2,242,139
_RS30595
RR42_RS30600: RR42_RS30600 - sulfurtransferase, at 2,242,289 to 2,243,917
_RS30600
RR42_RS30605: RR42_RS30605 - ABC transporter substrate-binding protein, at 2,244,269 to 2,245,213
_RS30605
RR42_RS30610: RR42_RS30610 - cystathionine beta-lyase, at 2,245,319 to 2,246,536
_RS30610
RR42_RS30615: RR42_RS30615 - plasmid stabilization protein, at 2,246,594 to 2,246,839
_RS30615
Group
Condition
RR42
_RS30595
RR42
_RS30600
RR42
_RS30605
RR42
_RS30610
RR42
_RS30615
lb
LB
-0.7
-0.7
-0.1
-0.0
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-1.1
-0.1
-0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.4
-0.4
-0.2
N.D.
stress
R2A with Bacitracin 0.5 mg/ml
+0.3
-0.8
-0.7
-0.1
N.D.
carbon source
L-Threonine (C)
-0.6
+0.2
-0.4
-0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.5
-0.1
-0.2
N.D.
carbon source
D-Lactate (C)
-0.4
-0.1
-0.1
-0.2
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.1
-0.2
-0.2
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
-0.5
+0.1
-0.0
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
-0.3
-0.2
+0.2
N.D.
stress
R2A with Chloride 300 mM
-0.5
+0.2
-0.1
-0.2
N.D.
stress
R2A with Zinc 0.1 mM
-0.3
-0.3
+0.2
-0.0
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.2
-0.6
+0.1
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
-0.3
-0.1
-0.1
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.5
-0.3
-0.2
+0.1
N.D.
carbon source
Heptanoic (C)
+0.5
-0.2
-0.1
-0.1
N.D.
nitrogen source
Glucuronamide (N)
+0.1
-0.4
+0.4
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
+0.5
-0.3
+0.0
-0.1
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
-0.3
+0.0
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
+0.4
-0.4
-0.2
N.D.
carbon source
propionate (C)
+0.4
+0.1
-0.3
+0.2
N.D.
carbon source
L-Proline (C)
+0.4
+0.3
-0.2
-0.1
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.1
+0.2
-0.3
N.D.
nitrogen source
D-Alanine (N)
-0.0
+0.2
+0.5
-0.2
N.D.
carbon source
D,L-Lactate (C)
+0.4
+0.3
+0.1
-0.1
N.D.
nitrogen source
L-Leucine (N)
+0.2
+0.1
+0.4
+0.2
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.4
+0.4
-0.0
N.D.
nitrogen source
L-Threonine (N)
+0.4
+0.3
+0.1
+0.1
N.D.
carbon source
Valeric (C)
+0.1
+0.5
+0.2
+0.1
N.D.
stress
R2A with Chlorite 4 mM
-0.1
+1.0
+0.2
-0.1
N.D.
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