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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30580 and RR42_RS30585 are separated by 245 nucleotides
RR42_RS30585 and RR42_RS30590 are separated by 57 nucleotides
RR42_RS30590 and RR42_RS30595 are separated by 137 nucleotides
RR42_RS30595 and RR42_RS30600 are separated by 149 nucleotides
RR42_RS30580: RR42_RS30580 - membrane protein, at 2,237,147 to 2,238,688
_RS30580
RR42_RS30585: RR42_RS30585 - chemotaxis protein, at 2,238,934 to 2,240,490
_RS30585
RR42_RS30590: RR42_RS30590 - LysR family transcriptional regulator, at 2,240,548 to 2,241,414
_RS30590
RR42_RS30595: RR42_RS30595 - hypothetical protein, at 2,241,552 to 2,242,139
_RS30595
RR42_RS30600: RR42_RS30600 - sulfurtransferase, at 2,242,289 to 2,243,917
_RS30600
Group
Condition
RR42
_RS30580
RR42
_RS30585
RR42
_RS30590
RR42
_RS30595
RR42
_RS30600
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.3
+0.1
-0.1
-0.4
-0.3
stress
R2A with Bacitracin 0.5 mg/ml
-0.6
-0.1
-0.4
+0.3
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.1
-0.2
-0.1
-1.1
lb
LB
+0.2
+0.3
-0.3
-0.7
-0.7
carbon source
L-Asparagine (C)
+0.1
-0.4
-0.3
-0.2
-0.3
carbon source
pyruvate (C)
-0.4
+0.2
-0.3
-0.1
-0.5
carbon source
D-Lactate (C)
-0.3
+0.2
-0.3
-0.4
-0.1
r2a
R2A
-0.4
+0.2
-0.3
+0.1
-0.4
carbon source
L-Threonine (C)
-0.3
+0.3
-0.2
-0.6
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.1
+0.0
-0.4
-0.5
carbon source
Azelaic (C)
-0.3
-0.2
-0.1
+0.4
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.3
+0.2
-0.4
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.2
-0.1
-0.2
-0.5
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.2
-0.1
-0.6
+0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.6
+0.3
-0.1
+0.3
carbon source
Octanoic (C)
-0.3
+0.2
-0.2
+0.2
+0.2
stress
R2A with Cephalothin 0.25 mg/ml
+0.0
+0.1
-0.4
+0.4
-0.1
carbon source
D-Gluconic Acid (C)
+0.1
-0.1
+0.2
+0.4
-0.3
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
+0.2
+0.5
-0.3
stress
R2A with Chlorite 4 mM
-0.4
-0.1
-0.2
-0.1
+1.0
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.5
+0.1
-0.1
+0.2
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.2
+0.1
+0.4
+0.4
carbon source
succinate (C)
+0.0
-0.2
+0.4
+0.4
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
-0.3
+0.1
+0.4
+0.1
nitrogen source
L-Valine (N)
+0.0
+0.1
+0.4
+0.4
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.4
+0.4
+0.5
-0.3
nitrogen source
L-Threonine (N)
-0.0
-0.1
+0.2
+0.4
+0.3
carbon source
L-Glutamine (C)
+0.0
-0.2
+0.3
+0.4
+0.3
carbon source
L-Alanine (C)
+0.1
+0.1
+0.2
+0.5
-0.1
carbon source
Hexanoic (C)
+0.4
-0.0
+0.1
+0.2
+0.3
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