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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30570 and RR42_RS30575 are separated by 97 nucleotides
RR42_RS30575 and RR42_RS30580 are separated by 266 nucleotides
RR42_RS30580 and RR42_RS30585 are separated by 245 nucleotides
RR42_RS30585 and RR42_RS30590 are separated by 57 nucleotides
RR42_RS30570: RR42_RS30570 - hypothetical protein, at 2,233,610 to 2,233,789
_RS30570
RR42_RS30575: RR42_RS30575 - glycosyl transferase family 51, at 2,233,887 to 2,236,880
_RS30575
RR42_RS30580: RR42_RS30580 - membrane protein, at 2,237,147 to 2,238,688
_RS30580
RR42_RS30585: RR42_RS30585 - chemotaxis protein, at 2,238,934 to 2,240,490
_RS30585
RR42_RS30590: RR42_RS30590 - LysR family transcriptional regulator, at 2,240,548 to 2,241,414
_RS30590
Group
Condition
RR42
_RS30570
RR42
_RS30575
RR42
_RS30580
RR42
_RS30585
RR42
_RS30590
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
-0.3
-0.3
+0.0
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
-0.1
-1.3
+0.1
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
-0.0
-0.6
-0.1
-0.4
carbon source
a-Ketoglutaric (C)
+0.2
+0.1
-0.6
-0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.6
-0.4
-0.3
-0.0
-0.4
carbon source
D-Gluconic Acid (C)
-0.8
+0.1
+0.1
-0.1
+0.2
r2a
R2A
+0.1
-0.1
-0.4
+0.2
-0.3
carbon source
L-Asparagine (C)
+0.2
-0.1
+0.1
-0.4
-0.3
carbon source
L-Lactate (C)
-0.7
+0.1
-0.1
-0.0
+0.3
carbon source
L-Glutamine (C)
-0.5
+0.1
+0.0
-0.2
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-0.6
+0.1
-0.0
+0.3
+0.1
stress
R2A with Chlorite 4 mM
+0.6
+0.0
-0.4
-0.1
-0.2
carbon source
pyruvate (C)
+0.5
+0.0
-0.4
+0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.0
+0.1
-0.6
+0.3
carbon source
D-Lactate (C)
+0.5
-0.1
-0.3
+0.2
-0.3
carbon source
L-Threonine (C)
+0.5
-0.1
-0.3
+0.3
-0.2
r2a
R2A
+0.4
-0.1
+0.1
+0.2
-0.3
nitrogen source
L-Glutamine (N)
+0.6
+0.2
+0.0
-0.2
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.0
-0.1
+0.4
+0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.2
+0.1
+0.5
+0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.0
+0.2
+0.2
-0.1
carbon source
D,L-Lactate (C)
+0.8
-0.1
+0.3
+0.0
-0.2
nitrogen source
L-Leucine (N)
+0.6
+0.2
-0.0
-0.3
+0.4
lb
LB
+0.5
+0.2
+0.2
+0.3
-0.3
carbon source
Protocatechuic Acid (C)
+0.8
-0.1
+0.3
-0.1
+0.0
carbon source
Disodium Glutarate (C)
+0.7
+0.1
+0.2
-0.0
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+1.0
-0.0
+0.4
-0.3
+0.1
stress
R2A with A22 0.01 mg/ml
+1.0
+0.0
-0.0
+0.3
-0.2
stress
R2A with copper (II) chloride 0.25 mM
+1.1
-0.2
+0.2
+0.2
-0.1
carbon source
adipate (C)
+0.6
+0.2
+0.0
-0.1
+0.5
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