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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30520 and RR42_RS30525 are separated by 157 nucleotides
RR42_RS30525 and RR42_RS30530 are separated by 57 nucleotides
RR42_RS30530 and RR42_RS30535 are separated by 185 nucleotides
RR42_RS30535 and RR42_RS30540 are separated by 398 nucleotides
RR42_RS30520: RR42_RS30520 - gentisate 1,2-dioxygenase, at 2,220,756 to 2,221,802
_RS30520
RR42_RS30525: RR42_RS30525 - LysR family transcriptional regulator, at 2,221,960 to 2,222,904
_RS30525
RR42_RS30530: RR42_RS30530 - MFS transporter, at 2,222,962 to 2,224,356
_RS30530
RR42_RS30535: RR42_RS30535 - cobalt transporter, at 2,224,542 to 2,225,492
_RS30535
RR42_RS30540: RR42_RS30540 - hypothetical protein, at 2,225,891 to 2,226,742
_RS30540
Group
Condition
RR42
_RS30520
RR42
_RS30525
RR42
_RS30530
RR42
_RS30535
RR42
_RS30540
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.1
+0.1
-4.0
-0.7
carbon source
Pimelic (C)
-0.1
+0.0
-0.0
-1.2
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.1
-0.1
-0.4
-1.0
nitrogen source
L-Lysine (N)
+0.2
-0.1
-0.1
-1.4
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.1
-0.2
-0.2
-0.4
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
-0.0
-0.2
-1.1
+0.4
carbon source
Pimelic (C)
-0.2
-0.1
-0.0
-0.7
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.2
-0.4
-0.2
-0.3
nitrogen source
L-Leucine (N)
-0.0
+0.1
+0.1
-0.6
-0.4
carbon source
Disodium Glutarate (C)
-0.1
+0.2
-0.0
-0.1
-0.7
temperature
R2A 37C
+0.1
-0.1
+0.2
-0.5
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
+0.0
-0.3
+0.3
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.2
+0.1
-0.4
+0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
+0.0
-0.4
+0.3
-0.1
carbon source
Dodecandioic (C)
-0.3
+0.0
+0.2
-0.4
+0.1
nitrogen source
L-Phenylalanine (N)
+0.2
-0.0
+0.3
-0.4
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
+0.3
-0.0
-0.5
-0.2
carbon source
Disodium Glutarate (C)
-0.2
+0.1
+0.1
-0.7
+0.3
stress
R2A with Chlorite 4 mM
+0.1
-0.0
+0.1
-0.6
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.0
+0.0
-0.5
+0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
+0.1
-0.2
+0.5
-0.2
carbon source
propionate (C)
+0.2
+0.1
+0.1
-0.4
+0.4
lb
LB
-0.1
-0.1
+0.2
+0.7
-0.2
carbon source
L-Phenylalanine (C)
+0.2
+0.2
+0.1
-0.3
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.4
+0.0
+0.7
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-0.1
+0.1
+0.4
+0.5
carbon source
L-Proline (C)
+0.2
+0.1
-0.0
+0.3
+0.4
carbon source
L-Leucine (C)
+0.3
+0.2
+0.0
+0.5
+0.1
carbon source
Protocatechuic Acid (C)
+3.1
+2.1
-0.0
-2.3
-0.8
carbon source
Protocatechuic Acid (C)
+3.0
+2.2
+0.2
-1.5
-0.2
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