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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30510 and RR42_RS30515 are separated by 41 nucleotides
RR42_RS30515 and RR42_RS30520 are separated by 66 nucleotides
RR42_RS30520 and RR42_RS30525 are separated by 157 nucleotides
RR42_RS30525 and RR42_RS30530 are separated by 57 nucleotides
RR42_RS30510: RR42_RS30510 - maleylacetoacetate isomerase, at 2,219,305 to 2,219,949
_RS30510
RR42_RS30515: RR42_RS30515 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 2,219,991 to 2,220,689
_RS30515
RR42_RS30520: RR42_RS30520 - gentisate 1,2-dioxygenase, at 2,220,756 to 2,221,802
_RS30520
RR42_RS30525: RR42_RS30525 - LysR family transcriptional regulator, at 2,221,960 to 2,222,904
_RS30525
RR42_RS30530: RR42_RS30530 - MFS transporter, at 2,222,962 to 2,224,356
_RS30530
Group
Condition
RR42
_RS30510
RR42
_RS30515
RR42
_RS30520
RR42
_RS30525
RR42
_RS30530
stress
R2A with Lomefloxacin 0.001 mM
-0.9
-0.0
+0.2
-0.2
-0.4
carbon source
L-Tryptophan (C)
-0.1
-0.6
-0.3
-0.0
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.2
-0.3
-0.1
-0.2
lb
LB
-0.7
-0.1
-0.1
-0.1
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.3
+0.1
-0.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
-0.2
+0.2
-0.3
+0.1
carbon source
Suberic (C)
-0.3
+0.4
-0.4
-0.0
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.2
-0.5
+0.0
-0.3
carbon source
succinate (C)
-0.3
+0.3
-0.2
-0.1
-0.1
carbon source
Dodecandioic (C)
-0.2
-0.2
-0.3
+0.0
+0.2
carbon source
Heptanoic (C)
-0.1
+0.2
-0.5
-0.1
+0.2
carbon source
propionate (C)
-0.2
-0.7
+0.2
+0.3
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.2
+0.2
-0.4
+0.0
carbon source
Azelaic (C)
-0.4
+0.4
-0.3
+0.2
-0.1
nitrogen source
L-Glutamine (N)
-0.2
-0.1
+0.4
-0.1
-0.3
carbon source
Suberic (C)
-0.4
+0.2
-0.2
+0.0
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.4
-0.2
-0.0
+0.3
+0.1
carbon source
adipate (C)
-0.2
+0.3
-0.2
+0.1
-0.1
carbon source
Hexanoic (C)
-0.5
+0.4
-0.1
+0.1
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.2
-0.4
-0.0
-0.2
carbon source
pyruvate (C)
-0.3
-0.3
+0.2
+0.1
+0.1
carbon source
adipate (C)
+0.0
+0.2
-0.4
+0.2
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.3
+0.2
-0.1
+0.1
carbon source
D-Lactate (C)
+0.3
-0.2
+0.2
+0.2
-0.1
carbon source
L-Malic (C)
+0.2
-0.3
+0.4
+0.1
+0.0
carbon source
L-Leucine (C)
-0.2
+0.3
+0.3
+0.2
+0.0
carbon source
Disodium Glutarate (C)
+0.1
+0.5
-0.1
+0.2
-0.0
stress
R2A with Sisomicin 0.035 mg/ml
+0.5
+0.2
+0.2
+0.2
+0.0
carbon source
Protocatechuic Acid (C)
+1.6
+4.5
+3.0
+2.2
+0.2
carbon source
Protocatechuic Acid (C)
+1.8
+5.2
+3.1
+2.1
-0.0
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