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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30485 and RR42_RS30490 are separated by 43 nucleotides
RR42_RS30490 and RR42_RS30495 are separated by 107 nucleotides
RR42_RS30495 and RR42_RS30500 are separated by 328 nucleotides
RR42_RS30500 and RR42_RS30505 are separated by 123 nucleotides
RR42_RS30485: RR42_RS30485 - hypothetical protein, at 2,214,173 to 2,214,526
_RS30485
RR42_RS30490: RR42_RS30490 - hypothetical protein, at 2,214,570 to 2,214,902
_RS30490
RR42_RS30495: RR42_RS30495 - transcriptional regulator, at 2,215,010 to 2,216,239
_RS30495
RR42_RS30500: RR42_RS30500 - 4-hydroxybenzoate transporter, at 2,216,568 to 2,217,911
_RS30500
RR42_RS30505: RR42_RS30505 - salicylate hydroxylase, at 2,218,035 to 2,219,243
_RS30505
Group
Condition
RR42
_RS30485
RR42
_RS30490
RR42
_RS30495
RR42
_RS30500
RR42
_RS30505
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
N.D.
+0.2
-0.3
-0.2
r2a
R2A
-0.5
N.D.
-0.2
-0.1
-0.4
stress
R2A with Chloride 300 mM
-0.4
N.D.
-0.1
-0.1
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
N.D.
-0.5
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
N.D.
-0.3
+0.0
+0.2
carbon source
L-Asparagine (C)
-0.2
N.D.
-0.3
-0.2
-0.2
carbon source
L-Malic (C)
-0.3
N.D.
-0.3
-0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
N.D.
+0.2
-0.3
-0.3
temperature
R2A 37C
+0.1
N.D.
-0.2
-0.2
-0.4
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
N.D.
-0.2
-0.2
+0.1
carbon source
Suberic (C)
-0.4
N.D.
+0.0
+0.1
-0.3
stress
R2A with Chlorite 4 mM
-0.2
N.D.
+0.1
-0.3
-0.1
carbon source
Trisodium citrate (C)
-0.3
N.D.
-0.2
+0.2
-0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.3
N.D.
-0.7
-0.2
+0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.6
N.D.
-0.0
-0.0
+0.2
nitrogen source
L-Valine (N)
-0.2
N.D.
+0.2
-0.4
+0.1
carbon source
L-Lactate (C)
-0.4
N.D.
-0.2
-0.2
+0.4
carbon source
L-Tryptophan (C)
+0.1
N.D.
+0.3
-0.0
-0.6
carbon source
succinate (C)
-0.2
N.D.
+0.3
+0.0
-0.3
carbon source
D-Gluconic Acid (C)
-0.1
N.D.
+0.2
+0.1
-0.3
nitrogen source
L-Threonine (N)
+0.1
N.D.
+0.3
+0.2
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
N.D.
+0.1
-0.3
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
N.D.
+0.4
-0.1
-0.1
nitrogen source
L-Leucine (N)
+0.2
N.D.
-0.1
+0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
N.D.
+0.4
+0.5
-0.3
nitrogen source
L-Phenylalanine (N)
+0.5
N.D.
+0.2
-0.1
+0.2
nitrogen source
nitrate (N)
+0.4
N.D.
+0.3
-0.0
+0.2
lb
LB
+1.1
N.D.
+0.1
-0.0
-0.0
carbon source
Protocatechuic Acid (C)
-0.3
N.D.
+0.1
+0.2
+3.6
carbon source
Protocatechuic Acid (C)
+0.4
N.D.
+0.0
+0.4
+3.1
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