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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30400 and RR42_RS30405 are separated by 170 nucleotides
RR42_RS30405 and RR42_RS30410 are separated by 86 nucleotides
RR42_RS30410 and RR42_RS30415 are separated by 146 nucleotides
RR42_RS30415 and RR42_RS30420 are separated by 66 nucleotides
RR42_RS30400: RR42_RS30400 - serine--glyoxylate aminotransferase, at 2,196,633 to 2,197,853
_RS30400
RR42_RS30405: RR42_RS30405 - GntR family transcriptional regulator, at 2,198,024 to 2,198,749
_RS30405
RR42_RS30410: RR42_RS30410 - hypothetical protein, at 2,198,836 to 2,199,054
_RS30410
RR42_RS30415: RR42_RS30415 - ABC transporter substrate-binding protein, at 2,199,201 to 2,199,488
_RS30415
RR42_RS30420: RR42_RS30420 - amidohydrolase, at 2,199,555 to 2,201,426
_RS30420
Group
Condition
RR42
_RS30400
RR42
_RS30405
RR42
_RS30410
RR42
_RS30415
RR42
_RS30420
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.3
-2.5
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.4
-0.1
-1.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.8
-1.8
+0.5
-0.1
N.D.
carbon source
L-Proline (C)
-0.0
-1.1
-0.8
-0.2
N.D.
nitrogen source
L-Glutamine (N)
+0.0
-0.3
-1.0
-0.6
N.D.
stress
R2A with nitrate 200 mM
-0.0
-0.4
-1.2
+0.1
N.D.
carbon source
D-Gluconic Acid (C)
+0.1
+0.2
-1.2
-0.3
N.D.
stress
R2A with Chloride 300 mM
+0.1
-0.2
-1.2
+0.3
N.D.
nitrogen source
L-Serine (N)
+0.0
+0.3
-1.4
-0.0
N.D.
stress
R2A with Chlorite 4 mM
-0.1
+0.3
-1.0
-0.1
N.D.
carbon source
D-Lactate (C)
-0.0
+0.5
-0.9
-0.3
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
-1.1
+0.4
-0.1
N.D.
stress
R2A with Zinc 0.1 mM
+0.1
+0.3
-1.3
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.6
+1.0
-0.0
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.4
+0.9
-0.4
N.D.
carbon source
Protocatechuic Acid (C)
-0.1
-1.3
+1.5
+0.4
N.D.
carbon source
adipate (C)
-0.3
-0.2
+0.6
+0.5
N.D.
carbon source
Azelaic (C)
-0.0
-0.3
+1.2
-0.1
N.D.
carbon source
Pimelic (C)
-0.2
-0.4
+1.1
+0.3
N.D.
nitrogen source
Glycine (N)
+0.2
-0.3
+1.1
+0.0
N.D.
carbon source
D,L-Lactate (C)
-0.2
+0.2
+1.2
-0.1
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+0.4
+1.2
-0.4
N.D.
carbon source
Hexanoic (C)
-0.1
+0.1
+1.3
+0.0
N.D.
carbon source
Heptanoic (C)
-0.2
+0.3
+1.0
+0.3
N.D.
carbon source
Disodium Glutarate (C)
-0.1
-0.2
+1.3
+0.4
N.D.
carbon source
Octanoic (C)
+0.0
+0.4
+0.9
+0.2
N.D.
carbon source
Dodecandioic (C)
-0.3
+0.1
+1.3
+0.5
N.D.
carbon source
succinate (C)
-0.1
+0.2
+1.5
-0.1
N.D.
carbon source
succinate (C)
-0.0
+0.3
+1.6
-0.0
N.D.
carbon source
Valeric (C)
-0.0
+0.4
+1.6
-0.2
N.D.
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