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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30375 and RR42_RS30380 overlap by 28 nucleotides
RR42_RS30380 and RR42_RS30385 are separated by 117 nucleotides
RR42_RS30385 and RR42_RS30390 are separated by 450 nucleotides
RR42_RS30390 and RR42_RS30395 are separated by 75 nucleotides
RR42_RS30375: RR42_RS30375 - amidohydrolase, at 2,188,453 to 2,189,718
_RS30375
RR42_RS30380: RR42_RS30380 - membrane protein, at 2,189,691 to 2,190,344
_RS30380
RR42_RS30385: RR42_RS30385 - membrane protein, at 2,190,462 to 2,191,532
_RS30385
RR42_RS30390: RR42_RS30390 - lactate dehydrogenase, at 2,191,983 to 2,195,027
_RS30390
RR42_RS30395: RR42_RS30395 - MFS transporter, at 2,195,103 to 2,196,371
_RS30395
Group
Condition
RR42
_RS30375
RR42
_RS30380
RR42
_RS30385
RR42
_RS30390
RR42
_RS30395
nitrogen source
casaminos (N)
-0.2
-0.7
-0.3
-0.2
-0.1
nitrogen source
L-Serine (N)
-0.2
-0.4
-0.2
-0.1
-0.1
stress
R2A with nitrate 200 mM
-0.3
-0.6
-0.2
-0.1
+0.0
carbon source
propionate (C)
-0.1
-0.4
-0.1
-0.2
-0.1
nitrogen source
L-Valine (N)
+0.3
-0.9
+0.1
-0.1
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.7
-0.1
+0.2
-0.0
stress
R2A with copper (II) chloride 0.25 mM
-0.2
-0.2
-0.2
-0.2
+0.1
carbon source
L-Histidine (C)
-0.1
-0.3
-0.1
-0.2
+0.2
carbon source
Hexanoic (C)
-0.1
-0.4
-0.1
-0.0
+0.2
carbon source
succinate (C)
-0.2
-0.4
-0.0
+0.0
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
-0.3
-0.3
+0.3
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.6
-0.0
-0.2
+0.4
nitrogen source
L-Isoleucine (N)
+0.1
-0.5
-0.0
-0.1
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.4
+0.5
-0.0
-0.1
carbon source
Azelaic (C)
-0.1
-0.4
-0.1
+0.1
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.3
+0.0
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.3
-0.5
+0.0
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.4
+0.1
-0.1
+0.3
carbon source
Protocatechuic Acid (C)
-0.1
-0.1
+0.1
-0.4
+0.3
carbon source
propionate (C)
-0.2
-0.3
+0.1
+0.0
+0.3
stress
R2A with Zinc 0.1 mM
-0.2
-0.2
+0.1
-0.1
+0.3
carbon source
Ethanol (C)
-0.1
-0.3
+0.1
+0.1
+0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.2
+0.1
-0.2
+0.3
temperature
R2A 37C
+0.2
-0.5
+0.2
-0.0
+0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.4
+0.3
-0.3
+0.2
carbon source
D,L-Lactate (C)
+0.1
+0.4
-0.1
+0.0
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.5
-0.2
+0.1
+0.0
carbon source
adipate (C)
-0.1
+0.4
+0.1
+0.0
+0.3
lb
LB
+0.6
+0.3
-0.0
+0.2
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
+0.5
+0.1
+0.5
+0.2
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