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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30160 and RR42_RS30165 are separated by 178 nucleotides
RR42_RS30165 and RR42_RS30170 are separated by 123 nucleotides
RR42_RS30170 and RR42_RS30175 are separated by 154 nucleotides
RR42_RS30175 and RR42_RS30180 are separated by 81 nucleotides
RR42_RS30160: RR42_RS30160 - sulfatase, at 2,140,146 to 2,141,345
_RS30160
RR42_RS30165: RR42_RS30165 - membrane protein, at 2,141,524 to 2,142,720
_RS30165
RR42_RS30170: RR42_RS30170 - aldolase, at 2,142,844 to 2,143,608
_RS30170
RR42_RS30175: RR42_RS30175 - beta-glucosidase, at 2,143,763 to 2,145,889
_RS30175
RR42_RS30180: RR42_RS30180 - hypothetical protein, at 2,145,971 to 2,147,392
_RS30180
Group
Condition
RR42
_RS30160
RR42
_RS30165
RR42
_RS30170
RR42
_RS30175
RR42
_RS30180
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.3
-0.4
-0.3
-0.0
stress
R2A with Chlorite 4 mM
-0.3
+0.0
-0.6
-0.3
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
+0.0
-0.6
-0.4
+0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
+0.0
-0.9
-0.0
+0.0
stress
R2A with nitrate 150 mM
-0.3
-0.2
-0.4
-0.2
+0.2
carbon source
succinate (C)
-0.0
-0.2
-0.4
-0.4
+0.2
carbon source
pyruvate (C)
-0.3
-0.1
-0.3
-0.4
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.2
-0.4
-0.1
+0.1
carbon source
L-Asparagine (C)
+0.1
+0.0
-0.7
-0.3
+0.1
stress
R2A with Chloride 300 mM
-0.2
-0.1
-0.3
-0.3
+0.1
carbon source
Trisodium citrate (C)
-0.2
-0.0
-0.4
-0.2
+0.1
stress
R2A with Zinc 0.1 mM
-0.4
-0.1
-0.4
-0.1
+0.3
temperature
R2A 23C
+0.2
-0.3
-0.2
-0.1
-0.1
carbon source
L-Malic (C)
-0.2
-0.1
-0.3
-0.2
+0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.5
-0.2
+0.5
-0.6
+0.3
carbon source
L-Histidine (C)
-0.1
+0.1
-0.4
-0.2
+0.0
carbon source
a-Ketoglutaric (C)
+0.0
-0.0
-0.3
-0.4
+0.3
stress
R2A with Sisomicin 0.035 mg/ml
-0.2
+0.2
-0.1
-0.4
-0.0
carbon source
Pimelic (C)
-0.4
-0.2
+0.4
-0.1
-0.0
nitrogen source
L-Glutamine (N)
+0.0
-0.2
-0.4
+0.2
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.2
+0.2
-0.2
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.2
-0.2
-0.4
+0.3
carbon source
Valeric (C)
-0.2
-0.3
+0.4
-0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.2
-0.1
-0.2
+0.3
carbon source
Pimelic (C)
-0.2
-0.1
+0.5
+0.1
-0.0
carbon source
Hexanoic (C)
-0.1
-0.2
+0.4
+0.2
-0.0
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.4
+0.2
+0.0
-0.2
+0.0
carbon source
Heptanoic (C)
-0.3
-0.1
+0.6
+0.3
-0.0
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.2
+0.4
+0.3
-0.2
carbon source
Hexanoic (C)
-0.2
+0.0
+0.9
-0.0
+0.0
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