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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30075 and RR42_RS30080 are separated by 82 nucleotides
RR42_RS30080 and RR42_RS30085 are separated by 16 nucleotides
RR42_RS30085 and RR42_RS30090 are separated by 475 nucleotides
RR42_RS30090 and RR42_RS30095 are separated by 183 nucleotides
RR42_RS30075: RR42_RS30075 - succinylglutamate desuccinylase, at 2,119,244 to 2,120,236
_RS30075
RR42_RS30080: RR42_RS30080 - MFS transporter, at 2,120,319 to 2,121,707
_RS30080
RR42_RS30085: RR42_RS30085 - hypothetical protein, at 2,121,724 to 2,122,089
_RS30085
RR42_RS30090: RR42_RS30090 - MFS transporter, at 2,122,565 to 2,123,836
_RS30090
RR42_RS30095: RR42_RS30095 - alcohol dehydrogenase, at 2,124,020 to 2,124,991
_RS30095
Group
Condition
RR42
_RS30075
RR42
_RS30080
RR42
_RS30085
RR42
_RS30090
RR42
_RS30095
stress
R2A with Chloride 300 mM
+0.2
-0.0
-0.9
-0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.3
-0.4
+0.2
-0.6
carbon source
Azelaic (C)
-0.2
-0.2
-0.6
-0.2
+0.1
carbon source
Octanoic (C)
+0.1
-0.2
-0.5
-0.3
-0.2
carbon source
adipate (C)
-0.3
+0.4
-1.2
-0.2
+0.2
r2a
R2A
-0.3
-0.2
-0.3
-0.2
-0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.1
-0.4
+0.0
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.3
-0.5
+0.0
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
-0.2
-0.6
+0.2
-0.2
carbon source
Suberic (C)
-0.3
-0.4
+0.7
-0.4
-0.1
lb
LB
-0.0
-0.1
-0.4
+0.4
-0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.2
-0.3
-0.3
+0.0
nitrogen source
casaminos (N)
-0.1
+0.1
+0.1
-0.4
+0.1
carbon source
Ethanol (C)
-0.3
+0.1
+0.3
-0.3
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.4
-0.3
-0.3
+0.1
carbon source
Pimelic (C)
-0.4
-0.0
+0.1
+0.2
+0.2
carbon source
L-Proline (C)
-0.0
-0.1
+0.3
-0.3
+0.3
carbon source
L-Alanine (C)
-0.1
-0.1
+0.1
-0.2
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
+0.3
+0.3
+0.1
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.1
+0.2
+0.3
-0.6
carbon source
Protocatechuic Acid (C)
+0.2
-0.1
+0.5
-0.3
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.2
+0.0
-0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.0
+0.0
+0.4
+0.2
carbon source
L-Tryptophan (C)
+0.2
-0.1
+0.2
-0.2
+0.3
stress
R2A with Zinc 0.1 mM
+0.5
+0.2
-0.1
+0.1
-0.1
carbon source
L-Glutamine (C)
-0.1
+0.1
+0.3
-0.1
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.4
+0.1
-0.1
+0.1
+0.2
carbon source
butyrate (C)
+0.1
+0.2
+0.5
-0.2
+0.1
nitrogen source
D-Alanine (N)
+0.0
+0.2
+0.4
+0.1
+0.2
nitrogen source
L-Lysine (N)
+0.1
-0.0
+0.5
+0.4
+0.3
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