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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS30025 and RR42_RS30030 are separated by 6623 nucleotides
RR42_RS30030 and RR42_RS30035 overlap by 4 nucleotides
RR42_RS30035 and RR42_RS30040 overlap by 20 nucleotides
RR42_RS30040 and RR42_RS30045 overlap by 14 nucleotides
RR42_RS30025: RR42_RS30025 - hypothetical protein, at 2,101,830 to 2,103,341
_RS30025
RR42_RS30030: RR42_RS30030 - hypothetical protein, at 2,109,965 to 2,110,213
_RS30030
RR42_RS30035: RR42_RS30035 - hemolysin D, at 2,110,210 to 2,111,259
_RS30035
RR42_RS30040: RR42_RS30040 - fusaric acid resistance protein, at 2,111,240 to 2,113,264
_RS30040
RR42_RS30045: RR42_RS30045 - RND transporter, at 2,113,251 to 2,114,789
_RS30045
Group
Condition
RR42
_RS30025
RR42
_RS30030
RR42
_RS30035
RR42
_RS30040
RR42
_RS30045
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
-0.6
-0.4
-0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.3
-0.5
-0.3
-0.2
carbon source
pyruvate (C)
-0.1
-0.3
-0.3
+0.0
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-0.6
+0.0
-0.1
-0.1
stress
R2A with nitrate 150 mM
-0.0
-0.6
-0.3
+0.1
+0.1
nitrogen source
L-Asparagine (N)
-0.2
-0.3
-0.2
+0.0
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
-0.3
-0.2
-0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.3
-0.3
-0.0
+0.2
lb
LB
+0.1
+0.3
-0.3
+0.1
-0.6
carbon source
L-Malic (C)
-0.1
-0.2
-0.2
+0.0
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.5
+0.0
-0.2
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-0.3
-0.1
-0.2
+0.2
nitrogen source
L-Serine (N)
-0.2
-0.3
+0.3
-0.1
-0.0
carbon source
Heptanoic (C)
-0.2
-0.3
+0.1
+0.1
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.5
+0.1
-0.1
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.1
-0.2
-0.2
-0.1
r2a
R2A
+0.1
-0.3
+0.3
-0.0
-0.1
carbon source
propionate (C)
-0.2
-0.3
+0.2
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.2
-0.3
-0.0
+0.2
carbon source
Suberic (C)
+0.1
-0.3
-0.1
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
+0.2
+0.2
+0.1
-0.1
carbon source
Disodium Glutarate (C)
-0.1
-0.2
-0.1
+0.2
+0.4
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
-0.3
+0.2
+0.2
carbon source
Protocatechuic Acid (C)
-0.1
+0.4
-0.0
-0.1
+0.3
nitrogen source
L-Leucine (N)
-0.1
+0.6
-0.1
+0.1
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
+0.5
+0.1
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
-0.1
+0.3
+0.2
-0.0
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.2
-0.0
-0.1
+0.4
nitrogen source
L-Glutamine (N)
+0.1
+0.2
+0.2
+0.3
-0.1
carbon source
Valeric (C)
-0.1
+0.5
-0.0
+0.1
+0.3
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