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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29960 and RR42_RS29965 are separated by 402 nucleotides
RR42_RS29965 and RR42_RS29970 are separated by 94 nucleotides
RR42_RS29970 and RR42_RS29980 are separated by 2406 nucleotides
RR42_RS29980 and RR42_RS29985 are separated by 1 nucleotides
RR42_RS29960: RR42_RS29960 - hypothetical protein, at 2,088,457 to 2,088,948
_RS29960
RR42_RS29965: RR42_RS29965 - LacI family transcriptional regulator, at 2,089,351 to 2,090,334
_RS29965
RR42_RS29970: RR42_RS29970 - IclR family transcriptional regulator, at 2,090,429 to 2,091,076
_RS29970
RR42_RS29980: RR42_RS29980 - transposase, at 2,093,483 to 2,093,845
_RS29980
RR42_RS29985: RR42_RS29985 - transposase, at 2,093,847 to 2,094,335
_RS29985
Group
Condition
RR42
_RS29960
RR42
_RS29965
RR42
_RS29970
RR42
_RS29980
RR42
_RS29985
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.3
+0.1
-0.5
-0.1
stress
R2A with nitrate 200 mM
+0.2
-0.1
-0.1
-0.4
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.5
+0.0
+0.1
-0.5
carbon source
L-Alanine (C)
-0.1
-0.1
-0.4
-0.3
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.3
-0.0
+0.5
-0.8
lb
LB
-0.0
-0.2
-0.4
-0.4
+0.4
stress
R2A with Chloride 300 mM
-0.2
+0.0
-0.4
+0.3
-0.4
nitrogen source
L-Glutamine (N)
+0.0
+0.1
-0.3
+0.3
-0.7
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.1
-0.5
+0.3
+0.0
carbon source
L-Lactate (C)
-0.0
-0.1
-0.4
+0.4
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.3
+0.2
-0.2
+0.2
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.0
-0.3
-0.3
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.3
-0.5
+0.4
+0.3
nitrogen source
Glycine (N)
+0.2
+0.3
-0.2
-0.5
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
+0.1
-0.5
+0.3
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.1
-0.5
+0.7
-0.2
carbon source
Azelaic (C)
+0.4
-0.2
+0.4
+0.0
-0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.0
-0.3
+0.4
+0.3
carbon source
Pimelic (C)
+0.1
-0.1
+0.7
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.3
+0.0
+0.4
+0.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.3
+0.3
+0.3
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.0
+0.4
+0.4
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.0
+0.4
+0.4
+0.3
carbon source
Suberic (C)
+0.5
+0.0
+0.1
+0.2
+0.6
carbon source
L-Asparagine (C)
+0.2
+0.2
+0.2
+0.4
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.2
+0.5
+0.2
+0.4
carbon source
Protocatechuic Acid (C)
+0.6
+0.1
+0.1
+0.6
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.0
+0.4
+0.5
+0.3
carbon source
adipate (C)
+0.0
-0.1
+3.6
-0.6
-0.0
carbon source
adipate (C)
+0.2
-0.1
+4.1
+0.3
+0.1
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