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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29930 and RR42_RS29935 are separated by 11 nucleotides
RR42_RS29935 and RR42_RS29940 are separated by 29 nucleotides
RR42_RS29940 and RR42_RS29945 are separated by 7 nucleotides
RR42_RS29945 and RR42_RS29950 overlap by 4 nucleotides
RR42_RS29930: RR42_RS29930 - acyl-CoA dehydrogenase, at 2,081,940 to 2,083,055
_RS29930
RR42_RS29935: RR42_RS29935 - acyl-CoA dehydrogenase, at 2,083,067 to 2,084,248
_RS29935
RR42_RS29940: RR42_RS29940 - hypothetical protein, at 2,084,278 to 2,085,015
_RS29940
RR42_RS29945: RR42_RS29945 - enoyl-CoA hydratase, at 2,085,023 to 2,085,763
_RS29945
RR42_RS29950: RR42_RS29950 - CoA-transferase, at 2,085,760 to 2,087,028
_RS29950
Group
Condition
RR42
_RS29930
RR42
_RS29935
RR42
_RS29940
RR42
_RS29945
RR42
_RS29950
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.3
+0.1
-0.3
-0.5
lb
LB
-0.2
-0.2
-0.2
-0.3
-0.1
nitrogen source
L-Serine (N)
-0.0
-0.2
-0.2
-0.4
-0.1
nitrogen source
nitrite (N)
+0.0
+0.1
-0.2
-0.5
-0.1
carbon source
D,L-Lactate (C)
+0.1
-0.1
-0.2
-0.2
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.3
+0.3
-0.2
-0.1
carbon source
L-Leucine (C)
+0.1
-0.0
-0.2
-0.4
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.1
+0.2
-0.3
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.1
+0.2
-0.4
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.2
+0.3
-0.2
-0.1
nitrogen source
L-Glutamine (N)
+0.1
+0.1
-0.2
-0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.1
-0.5
+0.3
-0.0
carbon source
Heptanoic (C)
-0.1
+0.1
-0.2
+0.3
-0.0
carbon source
adipate (C)
+0.0
+0.1
-0.2
+0.3
-0.2
stress
R2A with Chlorite 4 mM
-0.1
+0.1
+0.1
+0.2
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.3
+0.3
+0.0
+0.1
carbon source
adipate (C)
-0.1
-0.0
+0.2
+0.3
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
+0.2
-0.1
+0.2
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.0
+0.3
-0.3
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
+0.1
-0.2
+0.3
+0.1
carbon source
L-Histidine (C)
+0.1
-0.2
+0.3
+0.2
+0.0
carbon source
Protocatechuic Acid (C)
+0.0
+0.0
+0.3
+0.3
-0.1
carbon source
pyruvate (C)
+0.0
-0.1
+0.3
+0.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.1
+0.3
+0.3
+0.1
carbon source
L-Histidine (C)
-0.0
-0.2
+0.2
+0.5
+0.1
carbon source
Octanoic (C)
-0.1
+0.1
+0.1
+0.3
+0.2
nitrogen source
Glycine (N)
+0.2
+0.2
-0.0
+0.2
+0.1
carbon source
succinate (C)
+0.2
+0.2
+0.2
+0.0
+0.1
carbon source
succinate (C)
+0.1
+0.2
+0.2
+0.3
+0.0
carbon source
L-Asparagine (C)
+0.3
+0.2
+0.3
+0.3
+0.1
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RR42_RS29940
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