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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29900 and RR42_RS29905 are separated by 58 nucleotides
RR42_RS29905 and RR42_RS29910 are separated by 129 nucleotides
RR42_RS29910 and RR42_RS29915 are separated by 357 nucleotides
RR42_RS29915 and RR42_RS29920 are separated by 151 nucleotides
RR42_RS29900: RR42_RS29900 - CoA-transferase, at 2,074,642 to 2,075,865
_RS29900
RR42_RS29905: RR42_RS29905 - LacI family transcriptional regulator, at 2,075,924 to 2,076,910
_RS29905
RR42_RS29910: RR42_RS29910 - LacI family transcriptional regulator, at 2,077,040 to 2,078,059
_RS29910
RR42_RS29915: RR42_RS29915 - MarR family transcriptional regulator, at 2,078,417 to 2,078,860
_RS29915
RR42_RS29920: RR42_RS29920 - hypothetical protein, at 2,079,012 to 2,079,377
_RS29920
Group
Condition
RR42
_RS29900
RR42
_RS29905
RR42
_RS29910
RR42
_RS29915
RR42
_RS29920
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.4
-0.4
-0.2
+0.1
-0.5
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
-0.1
-0.1
-0.2
-0.2
carbon source
Protocatechuic Acid (C)
+0.0
-0.0
-0.6
-0.4
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.1
-0.7
-0.3
-0.0
carbon source
adipate (C)
+0.1
-0.2
-0.5
-0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.1
-1.8
+0.5
+0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.2
-0.6
-0.2
+0.1
carbon source
D,L-Lactate (C)
-0.1
-0.1
-0.4
+0.1
-0.3
carbon source
L-Proline (C)
+0.2
-0.3
-0.6
-0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.0
-1.3
+0.4
-0.1
carbon source
D-Lactate (C)
+0.0
-0.1
-0.7
-0.1
+0.1
carbon source
D-Lactate (C)
+0.1
-0.1
-0.5
+0.1
-0.2
nitrogen source
nitrite (N)
-0.1
+0.0
-0.8
-0.2
+0.4
carbon source
Hexanoic (C)
-0.1
-0.2
-0.2
-0.3
+0.1
carbon source
Octanoic (C)
+0.1
+0.2
-0.3
-0.1
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.1
-0.5
+0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.2
-1.0
+0.5
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.2
-0.5
+0.2
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
-0.3
-0.2
+0.1
+0.3
lb
LB
-0.0
+0.4
-0.4
+0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
+0.4
-1.4
+0.3
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.3
-1.0
+0.5
-0.0
carbon source
a-Ketoglutaric (C)
+0.0
+0.3
-0.3
+0.2
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.1
-0.1
+0.3
-0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.1
+0.1
+0.3
-0.4
carbon source
Disodium Glutarate (C)
-0.3
-0.1
+0.6
+0.1
+0.1
carbon source
Disodium Glutarate (C)
-0.1
+0.1
+0.7
+0.0
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.0
-0.1
+0.7
-0.2
carbon source
L-Asparagine (C)
+0.3
+0.2
+0.1
-0.1
+0.4
carbon source
L-Asparagine (C)
+0.2
+0.4
+0.4
+0.3
+0.1
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