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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29535 and RR42_RS29545 are separated by 1288 nucleotides
RR42_RS29545 and RR42_RS29550 are separated by 24 nucleotides
RR42_RS29550 and RR42_RS29555 are separated by 237 nucleotides
RR42_RS29555 and RR42_RS29560 are separated by 1543 nucleotides
RR42_RS29535: RR42_RS29535 - isocitrate dehydrogenase, at 1,982,279 to 1,983,319
_RS29535
RR42_RS29545: RR42_RS29545 - mannosyltransferase, at 1,984,608 to 1,985,405
_RS29545
RR42_RS29550: RR42_RS29550 - ABC transporter permease, at 1,985,430 to 1,986,281
_RS29550
RR42_RS29555: RR42_RS29555 - porin, at 1,986,519 to 1,987,643
_RS29555
RR42_RS29560: RR42_RS29560 - hypothetical protein, at 1,989,187 to 1,990,239
_RS29560
Group
Condition
RR42
_RS29535
RR42
_RS29545
RR42
_RS29550
RR42
_RS29555
RR42
_RS29560
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-1.1
N.D.
N.D.
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.8
N.D.
N.D.
-0.0
carbon source
D,L-Lactate (C)
-0.1
-0.8
N.D.
N.D.
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.4
N.D.
N.D.
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-1.0
N.D.
N.D.
+0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.7
N.D.
N.D.
+0.0
carbon source
Suberic (C)
-0.3
-0.5
N.D.
N.D.
+0.1
r2a
R2A
-0.2
-0.6
N.D.
N.D.
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-0.7
N.D.
N.D.
+0.1
r2a
R2A
-0.1
-0.6
N.D.
N.D.
+0.1
carbon source
Trisodium citrate (C)
-1.0
+0.5
N.D.
N.D.
+0.0
carbon source
L-Alanine (C)
+0.1
-0.5
N.D.
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.7
N.D.
N.D.
+0.0
nitrogen source
D-Alanine (N)
-0.3
+0.3
N.D.
N.D.
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.3
N.D.
N.D.
+0.1
carbon source
Octanoic (C)
-0.2
+0.6
N.D.
N.D.
-0.1
nitrogen source
L-Phenylalanine (N)
-0.1
+0.5
N.D.
N.D.
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.5
N.D.
N.D.
+0.2
carbon source
L-Histidine (C)
-0.1
+0.6
N.D.
N.D.
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.6
N.D.
N.D.
-0.1
carbon source
D-Lactate (C)
-0.1
+0.6
N.D.
N.D.
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.7
N.D.
N.D.
+0.0
nitrogen source
Glycine (N)
-0.0
+0.6
N.D.
N.D.
+0.1
carbon source
Heptanoic (C)
-0.0
+0.9
N.D.
N.D.
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.7
N.D.
N.D.
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+0.7
N.D.
N.D.
+0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.1
+0.7
N.D.
N.D.
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.7
N.D.
N.D.
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.6
N.D.
N.D.
+0.1
carbon source
a-Ketoglutaric (C)
-0.0
+1.0
N.D.
N.D.
+0.1
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