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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29485 and RR42_RS29490 are separated by 264 nucleotides
RR42_RS29490 and RR42_RS29495 are separated by 2 nucleotides
RR42_RS29495 and RR42_RS29500 are separated by 153 nucleotides
RR42_RS29500 and RR42_RS29505 are separated by 19 nucleotides
RR42_RS29485: RR42_RS29485 - fatty-acid--CoA ligase, at 1,971,968 to 1,973,593
_RS29485
RR42_RS29490: RR42_RS29490 - toxin HipA, at 1,973,858 to 1,974,109
_RS29490
RR42_RS29495: RR42_RS29495 - toxin HipA, at 1,974,112 to 1,975,452
_RS29495
RR42_RS29500: RR42_RS29500 - acyl-CoA dehydrogenase, at 1,975,606 to 1,976,781
_RS29500
RR42_RS29505: RR42_RS29505 - hypothetical protein, at 1,976,801 to 1,977,181
_RS29505
Group
Condition
RR42
_RS29485
RR42
_RS29490
RR42
_RS29495
RR42
_RS29500
RR42
_RS29505
nitrogen source
L-Glutamine (N)
-0.1
-1.1
+0.1
+0.2
-1.8
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-1.0
-0.2
-0.4
-0.8
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.8
-0.3
-0.2
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-1.7
-0.0
-0.2
-0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-1.1
+0.0
-0.1
-0.9
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-1.6
-0.1
-0.1
-0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.8
+0.1
-0.6
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-1.7
-0.5
-0.4
+0.5
stress
R2A with nitrate 200 mM
-0.0
-1.1
-0.1
-0.1
-0.4
nitrogen source
Glucuronamide (N)
-0.1
-0.7
-0.0
-0.2
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-1.6
-0.0
-0.1
+0.3
carbon source
Ethanol (C)
-0.0
-1.1
-0.0
-0.2
-0.2
carbon source
L-Asparagine (C)
+0.0
-1.4
-0.5
-0.2
+0.6
stress
R2A with Chloride 300 mM
+0.1
-0.9
-0.1
-0.0
-0.5
carbon source
Trisodium citrate (C)
+0.0
-1.0
-0.3
-0.1
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.0
-0.8
-0.2
-0.4
+0.2
carbon source
adipate (C)
+0.0
-0.8
+0.2
-0.2
-0.3
carbon source
Disodium Glutarate (C)
-0.1
-0.5
-0.2
-0.2
+0.5
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.7
+0.3
-0.1
+0.3
carbon source
D,L-Lactate (C)
-0.1
-0.6
+0.1
-0.2
+0.6
stress
R2A with nitrate 200 mM
-0.0
-0.6
-0.1
-0.0
+0.7
nitrogen source
nitrate (N)
+0.2
+0.6
-0.1
+0.1
-0.7
lb
LB
+0.0
+0.8
+0.1
+0.2
-1.0
stress
R2A with Cobalt chloride 0.3 mM
+0.2
-0.8
-0.1
-0.0
+0.9
carbon source
adipate (C)
+0.1
-0.8
+0.0
+0.1
+0.8
carbon source
propionate (C)
+0.1
-0.2
+0.1
+0.2
+0.9
nitrogen source
L-Isoleucine (N)
+0.1
+0.4
+0.2
+0.0
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.4
+0.1
+0.3
+1.3
carbon source
L-Leucine (C)
-0.1
+0.5
+0.2
+0.3
+0.6
carbon source
D-Lactate (C)
+0.1
+0.7
+0.2
+0.0
+0.9
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