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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29475 and RR42_RS29480 are separated by 240 nucleotides
RR42_RS29480 and RR42_RS29485 are separated by 38 nucleotides
RR42_RS29485 and RR42_RS29490 are separated by 264 nucleotides
RR42_RS29490 and RR42_RS29495 are separated by 2 nucleotides
RR42_RS29475: RR42_RS29475 - AMP-dependent synthetase, at 1,969,272 to 1,970,918
_RS29475
RR42_RS29480: RR42_RS29480 - AraC family transcriptional regulator, at 1,971,159 to 1,971,929
_RS29480
RR42_RS29485: RR42_RS29485 - fatty-acid--CoA ligase, at 1,971,968 to 1,973,593
_RS29485
RR42_RS29490: RR42_RS29490 - toxin HipA, at 1,973,858 to 1,974,109
_RS29490
RR42_RS29495: RR42_RS29495 - toxin HipA, at 1,974,112 to 1,975,452
_RS29495
Group
Condition
RR42
_RS29475
RR42
_RS29480
RR42
_RS29485
RR42
_RS29490
RR42
_RS29495
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.2
-0.0
-1.7
-0.5
carbon source
L-Asparagine (C)
-0.2
+0.1
+0.0
-1.4
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.0
-0.1
-0.8
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.1
-0.0
-1.7
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.3
-0.1
-1.6
-0.1
nitrogen source
L-Glutamine (N)
-0.2
-0.1
-0.1
-1.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.3
-0.1
-1.6
-0.0
stress
R2A with nitrate 200 mM
-0.1
+0.1
-0.0
-1.1
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.0
-0.1
-1.1
+0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.2
-0.2
-1.0
-0.2
carbon source
Hexanoic (C)
-0.2
+0.1
-0.1
-0.9
-0.1
carbon source
Trisodium citrate (C)
-0.1
+0.2
+0.0
-1.0
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.3
+0.2
-0.8
-0.1
carbon source
Disodium Glutarate (C)
-0.1
-0.2
+0.0
-0.6
-0.1
carbon source
adipate (C)
-0.2
-0.2
+0.0
-0.8
+0.2
carbon source
Disodium Glutarate (C)
-0.2
+0.1
-0.1
-0.5
-0.2
carbon source
Hexanoic (C)
-0.2
-0.0
+0.1
-0.9
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
+0.2
-0.0
-0.8
-0.2
carbon source
succinate (C)
-0.1
+0.1
+0.0
-0.7
-0.1
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
-0.1
-0.8
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.0
+0.2
-0.8
+0.0
carbon source
Ethanol (C)
+0.0
+0.4
-0.0
-1.1
-0.0
carbon source
adipate (C)
-0.0
+0.0
+0.1
-0.8
+0.0
stress
R2A with Chloride 300 mM
+0.1
+0.2
+0.1
-0.9
-0.1
r2a
R2A
-0.1
+0.2
-0.0
-0.8
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.1
-0.1
-0.7
+0.3
stress
R2A with Chloride 300 mM
+0.0
+0.3
+0.1
-0.7
-0.1
temperature
R2A 23C
+0.1
+0.3
-0.0
+0.7
-0.1
carbon source
D-Lactate (C)
-0.1
+0.1
+0.1
+0.7
+0.2
nitrogen source
L-Leucine (N)
+0.1
+0.0
-0.0
+1.2
-0.0
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