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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29410 and RR42_RS29415 are separated by 66 nucleotides
RR42_RS29415 and RR42_RS29420 are separated by 39 nucleotides
RR42_RS29420 and RR42_RS29425 are separated by 85 nucleotides
RR42_RS29425 and RR42_RS29430 are separated by 138 nucleotides
RR42_RS29410: RR42_RS29410 - acetyl-CoA carboxylase, at 1,951,834 to 1,953,456
_RS29410
RR42_RS29415: RR42_RS29415 - acyl-CoA dehydrogenase, at 1,953,523 to 1,954,677
_RS29415
RR42_RS29420: RR42_RS29420 - 3-methylcrotonyl-CoA carboxylase, at 1,954,717 to 1,956,717
_RS29420
RR42_RS29425: RR42_RS29425 - enoyl-CoA hydratase, at 1,956,803 to 1,957,588
_RS29425
RR42_RS29430: RR42_RS29430 - acyl-CoA synthetase, at 1,957,727 to 1,959,232
_RS29430
Group
Condition
RR42
_RS29410
RR42
_RS29415
RR42
_RS29420
RR42
_RS29425
RR42
_RS29430
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
-0.2
-0.9
-0.5
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.2
-0.6
+0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
-0.1
-0.6
-0.0
-0.0
temperature
R2A 37C
-0.1
-0.2
-0.1
-0.3
-0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.3
-0.1
-0.5
-0.1
+0.0
nitrogen source
D-Alanine (N)
-0.5
+0.1
-0.4
+0.0
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.2
+0.1
-0.3
-0.0
carbon source
a-Ketoglutaric (C)
-0.5
-0.0
-0.6
+0.2
+0.1
carbon source
L-Leucine (C)
-0.5
-0.0
-0.4
+0.1
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.0
+0.1
+0.2
-1.0
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.1
-0.1
+0.2
-0.2
temperature
R2A 23C
+0.2
+0.1
+0.0
-0.7
-0.2
carbon source
L-Alanine (C)
-0.4
-0.0
-0.4
+0.2
+0.1
carbon source
Ethanol (C)
-0.4
+0.1
-0.3
+0.2
+0.0
carbon source
L-Leucine (C)
-0.5
+0.0
-0.1
+0.2
+0.1
carbon source
Valeric (C)
+0.2
-0.2
-0.0
-0.4
+0.1
carbon source
L-Alanine (C)
-0.3
+0.1
-0.4
+0.5
-0.1
carbon source
L-Tryptophan (C)
-0.3
+0.0
-0.3
+0.4
-0.1
stress
R2A with copper (II) chloride 0.25 mM
+0.3
-0.1
+0.3
-0.5
-0.0
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.1
+0.5
-0.2
carbon source
L-Tryptophan (C)
-0.3
+0.1
-0.1
+0.4
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.1
-0.3
-0.3
+0.2
nitrogen source
L-Lysine (N)
-0.2
+0.3
-0.1
+0.3
+0.0
r2a
R2A
-0.2
+0.0
+0.3
+0.3
-0.1
nitrogen source
L-Glutamine (N)
+0.3
-0.1
+0.3
+0.3
-0.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.1
+0.1
+0.4
+0.5
+0.1
carbon source
L-Proline (C)
+0.1
+0.1
+0.5
+0.4
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.0
+0.2
+0.7
+0.2
carbon source
adipate (C)
+1.6
+0.1
+0.9
-0.1
+0.0
carbon source
adipate (C)
+1.8
-0.1
+1.2
-0.1
+0.1
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