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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29380 and RR42_RS29385 are separated by 402 nucleotides
RR42_RS29385 and RR42_RS29390 are separated by 276 nucleotides
RR42_RS29390 and RR42_RS29395 are separated by 273 nucleotides
RR42_RS29395 and RR42_RS29400 are separated by 154 nucleotides
RR42_RS29380: RR42_RS29380 - arsenite oxidase small subunit, at 1,944,206 to 1,944,724
_RS29380
RR42_RS29385: RR42_RS29385 - long-chain fatty acid--CoA ligase, at 1,945,127 to 1,946,695
_RS29385
RR42_RS29390: RR42_RS29390 - terpene utilization protein AtuA, at 1,946,972 to 1,948,807
_RS29390
RR42_RS29395: RR42_RS29395 - AraC family transcriptional regulator, at 1,949,081 to 1,949,845
_RS29395
RR42_RS29400: RR42_RS29400 - hypothetical protein, at 1,950,000 to 1,950,812
_RS29400
Group
Condition
RR42
_RS29380
RR42
_RS29385
RR42
_RS29390
RR42
_RS29395
RR42
_RS29400
stress
R2A with Lomefloxacin 0.001 mM
-0.9
-0.2
-0.1
-0.5
-0.3
temperature
R2A 37C
-0.1
+0.2
-0.2
-0.3
-0.2
nitrogen source
L-Asparagine (N)
-0.4
+0.1
-0.2
-0.1
+0.0
carbon source
Pimelic (C)
-0.4
-0.0
-0.2
+0.2
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.3
-0.2
-0.3
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
-0.3
-0.2
+0.1
carbon source
Disodium Glutarate (C)
-0.4
-0.1
+0.0
+0.3
+0.1
carbon source
Valeric (C)
-0.4
+0.1
-0.1
+0.3
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
-0.0
+0.2
+0.1
+0.2
stress
R2A with Zinc 0.1 mM
+0.3
+0.0
-0.3
+0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.1
-0.3
+0.2
+0.1
lb
LB
-0.5
+0.4
+0.2
-0.2
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.4
+0.2
+0.1
+0.2
+0.1
carbon source
Valeric (C)
-0.4
+0.1
+0.2
+0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
+0.1
-0.2
-0.1
+0.1
carbon source
Suberic (C)
-0.3
+0.0
-0.0
+0.6
+0.0
carbon source
Ethanol (C)
+0.1
-0.1
-0.1
+0.2
+0.2
carbon source
adipate (C)
-0.4
+0.1
+0.1
+0.4
+0.2
carbon source
adipate (C)
+0.4
+0.1
-0.2
+0.3
-0.0
stress
R2A with nitrate 200 mM
+0.6
+0.0
+0.1
-0.1
+0.1
carbon source
Hexanoic (C)
+0.2
-0.1
-0.1
+0.4
+0.2
carbon source
D,L-Lactate (C)
+0.4
+0.2
+0.2
-0.2
+0.0
carbon source
Heptanoic (C)
-0.1
+0.2
+0.1
+0.5
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
+0.2
+0.3
+0.3
-0.0
nitrogen source
L-Leucine (N)
+0.7
+0.0
+0.0
+0.0
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.2
-0.1
+0.2
+0.1
nitrogen source
L-Tryptophan (N)
+0.3
+0.0
+0.3
+0.3
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.2
+0.2
-0.0
+0.2
stress
R2A with A22 0.01 mg/ml
+0.6
+0.0
+0.1
+0.1
+0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.4
+0.2
+0.1
+0.1
+0.1
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