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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29280 and RR42_RS29285 are separated by 34 nucleotides
RR42_RS29285 and RR42_RS29290 are separated by 95 nucleotides
RR42_RS29290 and RR42_RS29295 are separated by 159 nucleotides
RR42_RS29295 and RR42_RS29300 are separated by 506 nucleotides
RR42_RS29280: RR42_RS29280 - hypothetical protein, at 1,922,402 to 1,922,581
_RS29280
RR42_RS29285: RR42_RS29285 - hypothetical protein, at 1,922,616 to 1,923,041
_RS29285
RR42_RS29290: RR42_RS29290 - diguanylate cyclase, at 1,923,137 to 1,924,108
_RS29290
RR42_RS29295: RR42_RS29295 - hypothetical protein, at 1,924,268 to 1,924,684
_RS29295
RR42_RS29300: RR42_RS29300 - hypothetical protein, at 1,925,191 to 1,925,493
_RS29300
Group
Condition
RR42
_RS29280
RR42
_RS29285
RR42
_RS29290
RR42
_RS29295
RR42
_RS29300
stress
R2A with Vancomycin 0.5 mg/ml
-3.3
-0.7
+0.2
+0.3
N.D.
carbon source
Protocatechuic Acid (C)
-2.3
-0.6
-0.4
+0.5
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.9
-0.1
-0.0
-0.7
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-2.2
+0.1
+0.1
+0.1
N.D.
carbon source
L-Malic (C)
-1.1
-0.5
-0.1
-0.2
N.D.
carbon source
L-Threonine (C)
-0.7
-0.6
-0.0
-0.5
N.D.
carbon source
Dodecandioic (C)
-1.6
+0.2
-0.2
-0.1
N.D.
stress
R2A with nitrate 200 mM
-1.1
-0.6
+0.3
-0.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.5
-0.4
+0.1
+0.1
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-1.0
+0.3
-0.7
-0.1
N.D.
carbon source
Ethanol (C)
-0.9
-0.3
+0.3
-0.5
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
-0.9
-0.2
+0.5
N.D.
carbon source
pyruvate (C)
-1.1
-0.1
+0.3
-0.5
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.5
-1.3
+0.1
-0.5
N.D.
carbon source
L-Histidine (C)
-1.0
-0.4
+0.4
-0.0
N.D.
carbon source
L-Histidine (C)
-1.3
+0.2
+0.4
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
-1.0
+0.2
-0.2
+0.5
N.D.
r2a
R2A
-0.9
+0.5
+0.1
-0.1
N.D.
nitrogen source
Glucuronamide (N)
+0.4
+0.4
-0.6
-0.5
N.D.
nitrogen source
nitrate (N)
+0.7
+0.1
-0.6
-0.5
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.9
-0.8
+0.1
-0.2
N.D.
nitrogen source
L-Citrulline (N)
+0.8
-0.2
-0.5
+0.1
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
+0.7
-0.7
-0.0
N.D.
nitrogen source
Glycine (N)
+1.2
-0.2
-0.1
-0.4
N.D.
carbon source
Azelaic (C)
-0.8
+0.3
+0.7
+0.3
N.D.
nitrogen source
L-Tryptophan (N)
+1.0
+0.1
-0.5
+0.1
N.D.
nitrogen source
L-Valine (N)
+1.1
+0.1
-0.5
+0.3
N.D.
lb
LB
-0.1
+0.5
-0.3
+1.3
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.1
+0.5
+0.2
-0.1
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.7
+0.3
+0.7
+0.2
N.D.
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RR42_RS29290
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