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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29260 and RR42_RS29265 are separated by 7 nucleotides
RR42_RS29265 and RR42_RS29270 are separated by 399 nucleotides
RR42_RS29270 and RR42_RS29275 are separated by 123 nucleotides
RR42_RS29275 and RR42_RS29280 are separated by 89 nucleotides
RR42_RS29260: RR42_RS29260 - hypothetical protein, at 1,917,623 to 1,918,972
_RS29260
RR42_RS29265: RR42_RS29265 - hypothetical protein, at 1,918,980 to 1,920,128
_RS29265
RR42_RS29270: RR42_RS29270 - AraC family transcriptional regulator, at 1,920,528 to 1,921,379
_RS29270
RR42_RS29275: RR42_RS29275 - permease, at 1,921,503 to 1,922,312
_RS29275
RR42_RS29280: RR42_RS29280 - hypothetical protein, at 1,922,402 to 1,922,581
_RS29280
Group
Condition
RR42
_RS29260
RR42
_RS29265
RR42
_RS29270
RR42
_RS29275
RR42
_RS29280
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.2
-0.2
-0.3
-3.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
-0.2
-0.2
-0.4
-2.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.0
-0.0
+0.3
-2.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.0
+0.1
-0.4
-1.9
stress
R2A with nitrate 200 mM
-0.4
-0.1
-0.4
+0.0
-1.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.2
+0.1
+0.0
-0.6
-1.5
carbon source
Dodecandioic (C)
-0.2
-0.2
+0.2
+0.1
-1.6
r2a
R2A
-0.2
-0.1
-0.2
+0.0
-0.9
carbon source
L-Histidine (C)
-0.0
-0.1
-0.2
+0.2
-1.3
carbon source
Protocatechuic Acid (C)
-0.1
-0.3
-0.0
+0.1
-1.0
carbon source
D-Lactate (C)
-0.1
+0.3
-0.0
-0.1
-1.0
carbon source
Trisodium citrate (C)
+0.0
+0.2
+0.2
-0.3
-1.2
carbon source
Valeric (C)
-0.2
+0.2
+0.0
+0.2
-1.1
carbon source
L-Histidine (C)
-0.0
+0.3
-0.3
+0.1
-1.0
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.5
-0.2
-0.3
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.3
+0.3
+0.1
-0.7
stress
R2A with Lomefloxacin 0.00075 mM
+0.6
-0.4
+0.2
+0.1
-1.0
carbon source
Heptanoic (C)
+0.2
-0.3
+0.2
+0.1
-0.6
nitrogen source
casaminos (N)
-0.3
-0.2
-0.3
+0.0
+0.8
nitrogen source
nitrite (N)
-0.6
+0.1
+0.0
+0.1
+0.7
nitrogen source
Glycine (N)
-0.3
+0.0
-0.2
-0.4
+1.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.1
-0.1
+0.2
+0.9
nitrogen source
L-Tryptophan (N)
-0.5
+0.2
-0.1
+0.0
+1.0
nitrogen source
L-Valine (N)
-0.3
-0.0
-0.1
-0.0
+1.1
stress
R2A with Chloride 300 mM
-0.5
+0.1
+0.1
+0.0
+1.2
lb
LB
+0.4
+0.4
+0.6
-0.2
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.3
-0.1
+0.1
+1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
+0.3
+0.1
+0.0
+1.0
stress
R2A with Lomefloxacin 0.001 mM
+0.6
+0.0
+0.8
-0.1
+0.5
carbon source
Octanoic (C)
+0.9
+0.2
+0.4
+0.1
+0.4
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