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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29245 and RR42_RS29250 overlap by 8 nucleotides
RR42_RS29250 and RR42_RS29255 are separated by 174 nucleotides
RR42_RS29255 and RR42_RS29260 are separated by 129 nucleotides
RR42_RS29260 and RR42_RS29265 are separated by 7 nucleotides
RR42_RS29245: RR42_RS29245 - nitrile hydratase, at 1,915,672 to 1,916,343
_RS29245
RR42_RS29250: RR42_RS29250 - nitrile hydratase, at 1,916,336 to 1,916,722
_RS29250
RR42_RS29255: RR42_RS29255 - GTP cyclohydrolase, at 1,916,897 to 1,917,493
_RS29255
RR42_RS29260: RR42_RS29260 - hypothetical protein, at 1,917,623 to 1,918,972
_RS29260
RR42_RS29265: RR42_RS29265 - hypothetical protein, at 1,918,980 to 1,920,128
_RS29265
Group
Condition
RR42
_RS29245
RR42
_RS29250
RR42
_RS29255
RR42
_RS29260
RR42
_RS29265
carbon source
Pimelic (C)
-0.6
+0.1
-3.5
-0.2
+0.1
carbon source
Pimelic (C)
-0.1
+0.1
-3.4
-0.2
+0.1
carbon source
butyrate (C)
-0.1
+0.0
-3.0
-0.1
-0.1
carbon source
Disodium Glutarate (C)
-0.2
-0.1
-3.0
-0.1
+0.1
carbon source
Octanoic (C)
-0.4
+0.1
-3.9
+0.9
+0.0
carbon source
Azelaic (C)
-0.0
+0.1
-3.1
-0.0
+0.0
carbon source
Octanoic (C)
-0.2
-0.1
-3.7
+0.9
+0.2
carbon source
Disodium Glutarate (C)
-0.2
+0.0
-2.7
+0.1
-0.1
carbon source
Azelaic (C)
-0.4
+0.2
-2.5
+0.1
-0.2
carbon source
Dodecandioic (C)
-0.0
+0.1
-1.6
-0.2
-0.2
carbon source
L-Tryptophan (C)
+0.1
-0.0
-1.5
-0.0
-0.1
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
-0.3
-0.3
-0.4
-0.3
carbon source
Protocatechuic Acid (C)
-0.7
-0.6
-0.0
-0.1
-0.0
carbon source
Protocatechuic Acid (C)
-0.2
-0.1
-0.5
-0.1
-0.3
carbon source
adipate (C)
-0.3
+0.2
-1.2
-0.2
+0.3
nitrogen source
nitrite (N)
+0.0
+0.3
-0.9
-0.6
+0.1
carbon source
L-Tryptophan (C)
+0.2
+0.0
-1.2
+0.1
-0.1
carbon source
Dodecandioic (C)
-0.1
+0.1
-1.1
+0.0
+0.3
carbon source
Suberic (C)
-0.4
-0.0
-0.7
+0.0
+0.2
nitrogen source
L-Leucine (N)
+0.3
+0.0
-1.0
-0.1
+0.1
carbon source
adipate (C)
-0.2
+0.3
-0.9
+0.1
-0.0
stress
R2A with Lomefloxacin 0.00075 mM
-0.4
-0.2
-0.3
+0.6
-0.4
nitrogen source
L-Tryptophan (N)
+0.3
+0.3
-0.7
-0.5
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.2
+0.2
-0.1
-0.6
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.5
+0.2
-0.1
-0.5
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.3
+0.4
+0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.0
-0.4
+0.6
+0.0
carbon source
pyruvate (C)
-0.3
+0.4
+0.4
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
+0.6
+0.2
+0.3
+0.3
lb
LB
+0.2
+0.2
+0.6
+0.4
+0.4
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