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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29075 and RR42_RS29080 are separated by 91 nucleotides
RR42_RS29080 and RR42_RS29085 are separated by 523 nucleotides
RR42_RS29085 and RR42_RS29090 are separated by 135 nucleotides
RR42_RS29090 and RR42_RS29095 are separated by 281 nucleotides
RR42_RS29075: RR42_RS29075 - LysR family transcriptional regulator, at 1,878,705 to 1,879,667
_RS29075
RR42_RS29080: RR42_RS29080 - 5-dehydro-4-deoxyglucarate dehydratase, at 1,879,759 to 1,880,673
_RS29080
RR42_RS29085: RR42_RS29085 - glucarate transporter, at 1,881,197 to 1,882,552
_RS29085
RR42_RS29090: RR42_RS29090 - galactarate dehydrogenase, at 1,882,688 to 1,884,226
_RS29090
RR42_RS29095: RR42_RS29095 - XRE family transcriptional regulator, at 1,884,508 to 1,884,849
_RS29095
Group
Condition
RR42
_RS29075
RR42
_RS29080
RR42
_RS29085
RR42
_RS29090
RR42
_RS29095
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.3
-0.2
-0.1
-1.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.4
+0.1
-0.1
-1.0
nitrogen source
D-Alanine (N)
-0.0
-0.1
-0.1
-0.4
-0.7
carbon source
Ethanol (C)
-0.0
-0.1
+0.0
+0.1
-1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.0
-0.1
+0.4
-1.6
nitrogen source
L-Glutamine (N)
-0.1
-0.1
-0.0
-0.4
-0.6
temperature
R2A 23C
+0.0
-0.4
-0.2
-0.2
-0.4
carbon source
Suberic (C)
-0.3
+0.1
-0.2
-0.2
-0.4
carbon source
propionate (C)
-0.0
+0.0
+0.1
-0.5
-0.5
carbon source
L-Leucine (C)
+0.1
-0.2
+0.1
+0.0
-0.9
nitrogen source
D-Alanine (N)
-0.0
-0.1
+0.1
-0.2
-0.7
nitrogen source
L-Isoleucine (N)
+0.2
-0.2
+0.1
-0.0
-0.8
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.2
-0.1
-0.5
-0.6
carbon source
D-Lactate (C)
-0.2
+0.0
+0.1
-0.1
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.1
+0.0
-0.2
-0.7
nitrogen source
nitrite (N)
-0.1
-0.1
+0.1
+0.1
-0.7
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.2
-0.2
+0.2
-0.4
nitrogen source
L-Leucine (N)
+0.2
-0.1
+0.1
-0.2
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.1
+0.2
+0.0
-0.8
carbon source
Azelaic (C)
+0.0
-0.2
+0.1
+0.3
-0.6
carbon source
pyruvate (C)
+0.2
-0.2
+0.1
-0.0
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
-0.1
+0.3
-0.1
-0.6
carbon source
adipate (C)
+0.4
-0.1
-0.1
+0.1
-0.7
carbon source
D-Gluconic Acid (C)
+0.2
-0.2
-0.1
+0.5
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.0
-0.1
-0.4
+0.7
lb
LB
+0.3
-0.1
-0.2
+0.4
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
+0.0
-0.0
+0.1
+1.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
-0.0
+0.1
-0.0
+2.2
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.1
-0.3
+0.2
+3.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.2
+0.0
+0.1
+3.2
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