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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29040 and RR42_RS29045 are separated by 177 nucleotides
RR42_RS29045 and RR42_RS29050 are separated by 179 nucleotides
RR42_RS29050 and RR42_RS29055 are separated by 9 nucleotides
RR42_RS29055 and RR42_RS29060 are separated by 133 nucleotides
RR42_RS29040: RR42_RS29040 - histidyl-tRNA synthetase, at 1,870,852 to 1,871,316
_RS29040
RR42_RS29045: RR42_RS29045 - esterase, at 1,871,494 to 1,872,456
_RS29045
RR42_RS29050: RR42_RS29050 - glutamate synthase, at 1,872,636 to 1,874,225
_RS29050
RR42_RS29055: RR42_RS29055 - AraC family transcriptional regulator, at 1,874,235 to 1,875,149
_RS29055
RR42_RS29060: RR42_RS29060 - LacI family transcriptional regulator, at 1,875,283 to 1,876,308
_RS29060
Group
Condition
RR42
_RS29040
RR42
_RS29045
RR42
_RS29050
RR42
_RS29055
RR42
_RS29060
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
+0.1
+0.3
-4.4
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-2.8
+0.1
+0.0
-0.2
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
-0.0
-0.0
-3.4
+0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-1.7
+0.1
-0.2
-0.1
+0.2
carbon source
Ethanol (C)
-1.2
-0.1
-0.1
-0.0
-0.2
stress
R2A with Zinc 0.1 mM
-0.5
-0.4
-0.3
-0.2
-0.1
lb
LB
-0.6
-0.7
+0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.2
+0.0
-0.0
+0.1
-0.2
carbon source
L-Asparagine (C)
-0.8
-0.2
-0.0
-0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
+0.1
-0.3
-0.3
-0.2
nitrogen source
L-Glutamine (N)
+0.2
-0.4
-0.3
-0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.1
+0.1
+0.1
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
+0.1
-0.8
-0.0
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
-0.4
-0.6
-0.3
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
-0.7
-0.2
+0.0
+0.2
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.7
+0.2
-0.3
-0.1
+0.1
carbon source
Octanoic (C)
-1.0
+0.1
+0.3
-0.3
+0.1
carbon source
Protocatechuic Acid (C)
-0.2
-0.5
-0.1
+0.5
-0.3
carbon source
Octanoic (C)
-0.7
+0.2
+0.4
-0.3
-0.0
nitrogen source
L-Asparagine (N)
-0.4
-0.2
-0.3
+0.2
+0.3
carbon source
Protocatechuic Acid (C)
-0.7
-0.2
+0.4
+0.3
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.5
+0.2
+0.1
-0.2
-0.3
carbon source
L-Histidine (C)
+0.8
-0.3
-0.1
+0.1
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.9
-0.2
-0.2
-0.2
+0.1
nitrogen source
L-Tryptophan (N)
-0.4
+0.2
-0.1
+0.3
+0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.4
+0.5
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
+1.5
+0.0
-0.2
-0.0
-0.3
stress
R2A with sodium fluoride 100 mM
-0.1
+0.2
+0.5
+0.3
+0.4
stress
R2A with Lomefloxacin 0.001 mM
+1.2
+0.4
+0.2
-0.2
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+1.3
+0.0
+0.3
-0.1
+0.3
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