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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS29010 and RR42_RS29015 are separated by 134 nucleotides
RR42_RS29015 and RR42_RS29020 are separated by 60 nucleotides
RR42_RS29020 and RR42_RS29025 are separated by 180 nucleotides
RR42_RS29025 and RR42_RS29030 are separated by 188 nucleotides
RR42_RS29010: RR42_RS29010 - LysR family transcriptional regulator, at 1,864,700 to 1,865,611
_RS29010
RR42_RS29015: RR42_RS29015 - IQ calmodulin-binding motif-containing protein, at 1,865,746 to 1,866,765
_RS29015
RR42_RS29020: RR42_RS29020 - hypothetical protein, at 1,866,826 to 1,867,176
_RS29020
RR42_RS29025: RR42_RS29025 - hypothetical protein, at 1,867,357 to 1,867,539
_RS29025
RR42_RS29030: RR42_RS29030 - metal-dependent hydrolase, at 1,867,728 to 1,868,690
_RS29030
Group
Condition
RR42
_RS29010
RR42
_RS29015
RR42
_RS29020
RR42
_RS29025
RR42
_RS29030
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.2
-0.9
N.D.
-0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
-0.1
-0.5
N.D.
-0.4
lb
LB
-0.0
-0.2
-0.4
N.D.
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.4
-0.2
N.D.
-0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.2
-0.2
-0.4
N.D.
-0.2
carbon source
L-Histidine (C)
-0.3
-0.2
+0.2
N.D.
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.4
+0.2
+0.1
N.D.
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.2
+0.5
N.D.
-0.5
carbon source
L-Asparagine (C)
-0.2
-0.2
+0.4
N.D.
-0.1
nitrogen source
Glucuronamide (N)
+0.1
-0.0
+0.4
N.D.
-0.6
carbon source
Pimelic (C)
-0.2
-0.3
+0.5
N.D.
-0.1
nitrogen source
L-Lysine (N)
-0.2
+0.1
+0.4
N.D.
-0.2
carbon source
Heptanoic (C)
-0.0
-0.3
+0.6
N.D.
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.4
+0.4
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
-0.3
-0.0
+0.6
N.D.
+0.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
-0.1
+0.4
N.D.
-0.1
carbon source
adipate (C)
-0.0
-0.1
+0.6
N.D.
-0.1
carbon source
Dodecandioic (C)
-0.0
-0.1
+0.7
N.D.
-0.1
carbon source
Protocatechuic Acid (C)
-0.3
+0.2
+0.6
N.D.
-0.1
carbon source
pyruvate (C)
-0.3
-0.0
+0.5
N.D.
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
-0.2
+0.7
N.D.
-0.1
nitrogen source
L-Isoleucine (N)
+0.2
+0.3
+0.5
N.D.
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.2
+0.2
+0.5
N.D.
-0.3
nitrogen source
nitrate (N)
+0.2
+0.2
+0.4
N.D.
-0.2
nitrogen source
L-Leucine (N)
+0.1
+0.3
+0.5
N.D.
-0.1
carbon source
Azelaic (C)
+0.2
+0.1
+0.5
N.D.
+0.1
nitrogen source
nitrite (N)
+0.2
+0.4
+0.3
N.D.
-0.0
carbon source
Disodium Glutarate (C)
+0.1
+0.2
+0.7
N.D.
-0.1
carbon source
Octanoic (C)
+0.2
+0.1
+0.7
N.D.
+0.1
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.4
+0.4
N.D.
+0.3
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